Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00442 ATGAATTTCAAGATGGATTCCGATAGCGCGAAGCTGTTCGTAGGAGGCATTTCTCGCGACACTACCGAACACGTTCTCAAACTCCACTTCGCCAAGTACGGCGTCGTTTCGGACTCCACAATCTCCGTAGACCGCACCACCCGAAGCCCTAGAGGTTTTGGCTTCGTCACCTTCTCCGACCTCTCCGCAGCTGATAAAGCCCTCCAAGACACCCACGTCATCCTCGGAAGAACGGTAGAAGTGAAAAAAGCAATTCCCAGGAGTGAACAACATCAACACCAAAACCCATTACAGAGTAGAGGgggtggttattattataataataataataataataatgatgataataataataatagtaatgactattgcagtgaccacaacgttaggactaaaaagaTATTTGTAGGGGGTTTACCTGCTGGTATATCCGAGGAGGAGTTTAAGAACTACTTTGAGAGGTTCGGTCGGATAACCGATGTCGTGGTGATGCAGGACAGTGTAACTCACCGGCCAAGGGGGTTTGGGTTCATCACTTTCGAGTCCGAGGAATCGGTTCAAAACGTTATGGTGAAGAGTTTTCATGACTTGAACGGTAGACAGGTGGAGGTGAAGAGGGCTGTTCCCAAAGAGGGGAACCATGGCTATGATGGGTTTAGTAAATTAAGAAATAAGAGTGAAAGAGGAGTTCCTAAGAGTTTTCCTCCTTTTAGTCATAGGGATATGCTCCCGCTCCCAGGTTTCACACCTTTGCCGTGGTATAGTGGTGATGGAGTATATGCATATGGGTCTAATGCGTATGGTTGCTGGTACCCTGTGGGTGGTTATGGGGGGAATGGATACGCAGTTCCTTCTGATGCTCCTAGTAACCTCTGGTATGGGCCAATGATGACTGGTCCTCAGGCATGTCAGGTGCCTTACGCTAGTGCTGTTCCAAATGTTGTGTATGTGGGGGGTAGGATTGGAATAGTAGGTAGTGGTGCTGGATCTTGGGGGTACACTGGCATTATGGGATCTGCAACAAATTTTAAATTTGATCAAGCTTTTAATGCCAATGAATTTGTTCCTGGCAATGTGACATCACCTCATGGTGTAAAGCAGGATGTTATTGACTCTTCAAGTTTGAAAGGAAGCAATGGTGGAATTTCTAGTTGA 1155 0.4346 MNFKMDSDSAKLFVGGISRDTTEHVLKLHFAKYGVVSDSTISVDRTTRSPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQHQHQNPLQSRGGGYYYNNNNNNNDDNNNNSNDYCSDHNVRTKKIFVGGLPAGISEEEFKNYFERFGRITDVVVMQDSVTHRPRGFGFITFESEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRNKSERGVPKSFPPFSHRDMLPLPGFTPLPWYSGDGVYAYGSNAYGCWYPVGGYGGNGYAVPSDAPSNLWYGPMMTGPQACQVPYASAVPNVVYVGGRIGIVGSGAGSWGYTGIMGSATNFKFDQAFNANEFVPGNVTSPHGVKQDVIDSSSLKGSNGGISS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00442 384 Gene3D - 128 216 IPR012677 -
Gma04g00442 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 209 IPR000504 GO:0003723
Gma04g00442 384 SUPERFAMILY RNA-binding domain, RBD 6 115 IPR035979 GO:0003676
Gma04g00442 384 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 381 - -
Gma04g00442 384 SMART rrm1_1 133 205 IPR000504 GO:0003723
Gma04g00442 384 SMART rrm1_1 11 82 IPR000504 GO:0003723
Gma04g00442 384 MobiDBLite consensus disorder prediction 90 123 - -
Gma04g00442 384 SUPERFAMILY RNA-binding domain, RBD 128 217 IPR035979 GO:0003676
Gma04g00442 384 MobiDBLite consensus disorder prediction 365 384 - -
Gma04g00442 384 Gene3D - 2 121 IPR012677 -
Gma04g00442 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 200 IPR000504 GO:0003723
Gma04g00442 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Gma04g00442 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Gma04g00442 384 MobiDBLite consensus disorder prediction 85 123 - -
Gma04g00442 384 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00442 Gma-Chr4 3913464 3915130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00442 6 272 Eukaryotic Initiation Factors Gene Family AT3G16380 25.556 1.46e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00442 K14411 - gmx:100786665 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00442 04 3913464 3915130 Gma04g00442 04 3913464 3915130 ECH
Gma04g00442 04 3913464 3915130 Gma06g00439 06 3735827 3737107 GST