Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00415 ATGATGTCCGTGTCAGCTGGTACGGCGTCGTTTCCTACAGTACCCTGGCTATCATTAGAAACAATTCGTGGGATGAAGAAGCTTCCACCAGATGGAAGGCGAGGGTTTGAGGTGCGCAAGCAAACAAAGATGAAAGAAGCGGATGAGCAACTATGCGAGGCGGCCATTAAAGGTGACACGAAGAAAGTGAGGTCTCTTATATACTCCGGCGCTGACGTCACCCACTTTGACGGCGATGGCCTCAATCCTCTGATGCACGCCGCAAAGCACGGCCATGCACCCGTCCTCACCCTCCTCCTCTCCGTCGGCGCTCCCTGGAACGCTCTTTCTCCCTCCAACCTCTCCGCCGGTGACTACGCCATGCAAGAAGGCCACAACGAAACCTTCGAGCTTCTCCTCAACGCCGGGATCCAATCTGAACTGATACTGGGAACAATTGCGAGGAAGGCAAACAAGAACGGCGATTCCGGTCACGATTATTTGGAAGATAGGGTGAGTTTTAGCGAAGACAAGCTTATGGACTCTGAAAGCAAGGCTGTGATGATGGCATGGGAGAATCCGTTGATGGAGGCTCATGCTAAGGCGGTTTGTTCCGGTGGTGGCCACGTACTCAATATTGGGTTTGGTATGGGGCTCGTGGATTCGGCCATTCAGCGATATGCACCTGCTTCACACACCATTGTTGAGGCTCATCCTGAGGTTTATGAACGCATGCTTCGCTCCGGTTGGGGCCAGAAGGAAAATGTCAAGATTGTTTTTGGACGATGGCAAGATGTTCTGCCTCAGCTTGAAACATATGATGGAATATTCTTCGACACCTATGGGGAGTACTACGAAGATCTGAGGGAGTTCCATCAGCATCTCCCGGCATTGTTGAAGACTGGTGGTATCTACTCATTCTTCAATGGCCTTTGTGGCAGTAATGCATTTTTCCATGTTGTTTACTGCCATTTGGTATCTCTTGAGCTTGAGAATTTGGGGTATTCCACACAATTGATTCCATTGCCGGTTAAGGATTGTTTGGGAGAACAAGTTTGGGAAGGTGTGAAACAAAGATATTGGCAGCTCGATACGTACTATCTTCCTGTCTGTCAGGCCATAGAGAACCCTGAGTGA 1116 0.4991 MMSVSAGTASFPTVPWLSLETIRGMKKLPPDGRRGFEVRKQTKMKEADEQLCEAAIKGDTKKVRSLIYSGADVTHFDGDGLNPLMHAAKHGHAPVLTLLLSVGAPWNALSPSNLSAGDYAMQEGHNETFELLLNAGIQSELILGTIARKANKNGDSGHDYLEDRVSFSEDKLMDSESKAVMMAWENPLMEAHAKAVCSGGGHVLNIGFGMGLVDSAIQRYAPASHTIVEAHPEVYERMLRSGWGQKENVKIVFGRWQDVLPQLETYDGIFFDTYGEYYEDLREFHQHLPALLKTGGIYSFFNGLCGSNAFFHVVYCHLVSLELENLGYSTQLIPLPVKDCLGEQVWEGVKQRYWQLDTYYLPVCQAIENPE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00415 371 Pfam Ankyrin repeats (3 copies) 52 138 IPR002110 GO:0005515
Gma04g00415 371 SUPERFAMILY Ankyrin repeat 51 138 IPR036770 -
Gma04g00415 371 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
Gma04g00415 371 CDD AdoMet_MTases 203 298 - -
Gma04g00415 371 ProSiteProfiles Arginine and arginine-like N-methyltransferase domain profile. 153 371 IPR026480 -
Gma04g00415 371 Gene3D - 37 149 IPR036770 -
Gma04g00415 371 ProSiteProfiles Ankyrin repeat region circular profile. 79 104 - -
Gma04g00415 371 Gene3D Vaccinia Virus protein VP39 150 366 IPR029063 -
Gma04g00415 371 PANTHER GUANIDINOACETATE N-METHYLTRANSFERASE 45 366 - -
Gma04g00415 371 SMART ANK_2a 112 141 IPR002110 GO:0005515
Gma04g00415 371 SMART ANK_2a 46 75 IPR002110 GO:0005515
Gma04g00415 371 SMART ANK_2a 79 108 IPR002110 GO:0005515
Gma04g00415 371 PIRSF Rmt2 34 159 IPR017408 GO:0016274
Gma04g00415 371 PIRSF Rmt2 147 368 IPR017408 GO:0016274
Gma04g00415 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 165 364 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00415 Gma-Chr4 3603210 3606367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00415 18 138 MAP Kinase Kinase Kinase AT2G31800 32.231 5.33e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00415 K18477 - gmx:100796916 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00415 04 3603210 3606367 Gma04g00415 04 3603210 3606367 ECH
Gma04g00415 04 3603210 3606367 Gma06g00404 06 3474841 3476981 GST