Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00410 ATGGCTCTGTTACACCGAGCCATGCGCACTATACCATCCCATCATCAGCGGTGGCAACATGCTTGGATGCTGCCTCCTCTCACCATTTGGATTTTTTCAATCACACTTCGTTATGGTTATTACGGCGATTCATGCATCCTGCTTGGCCCTGCCTCGTCCCGTTTGATGAAGACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAAACGAGGACAATAATCAAGTTATTCTCCATGCCTTCAACGAGGAGCCCGAGTTAAGCTCCCAAACTAATTGGACAGTGTCAAATTTCTTCCTTGTTGAAGCGTATAAAAGCAAGGTAATTTCTTTGTGGTTAAATCAGGGCTCCACCATCCGTATGAGGTGGGAAGCACACACTACTAGTAGTTTGGATCAGCTACATGGGATGGTGATCAAAGGAGAAAAGAAGTTTGAACTACTACAGCCTAAACAAACGAGCTTCCTCAATGCAATTGCTCTTCGCAAGACTGTTAATGGTAAAGAAGCTGAATACAATGTTGAGGAAGATAATATATACCACATTGGGGTTCTAAACATGAATTCCAGGAACATAATATTGACTATGAAAGTTAATGTTTTGGCAAAGGTATATGATACCACCAAAGGCAAGAAGATGTGCTCTACTGCAAATGGATTCTGTAGACTCAGTTTTGTCTTCCCTAATACTCAGTATGTTATTCTTACGGCAACTGGCAAAGTTGATGGGGGATCGTATGTTGAAATTTCTTTTCTGGCTCGTGTGTTGACCTACATATTACTTTTAGGAGCTCTTATGATTGTTATTTATCTGGTTCTGAAGTTCCTTGAAGTCCATGAAGGTGGTGATCAGAATAGTCATGCGGCAGTCGACGTCACATACAGAACAAGTAATGTAGTTGCAAGGCAAACCGAAACTCAGCCCTTGATGCAAGTGGAGACAAATCGATTGACATATGGAACAAATGCAAAAGATGATGAAGAAGAAGATTCAGGAGCATCCAGTAGCTCTTCAGAGGAGTTATATGATGAAAAATTGTGTTGCATTTGTTATGATGAACAACGCAGTAGCTTCTTTGTTCCTTGTGGACATTGTGCCACTTGCTATGACTGTGCACAGAGGATTTTAGATGAGGAGAGCATAGTGTGTCCTATATGCCGAAGGCTTATTCACAAAGTACGAAGATTATATCATAATTAG 1200 0.4125 MALLHRAMRTIPSHHQRWQHAWMLPPLTIWIFSITLRYGYYGDSCILLGPASSRLMKTSSVFVKQLQVSNEDNNQVILHAFNEEPELSSQTNWTVSNFFLVEAYKSKVISLWLNQGSTIRMRWEAHTTSSLDQLHGMVIKGEKKFELLQPKQTSFLNAIALRKTVNGKEAEYNVEEDNIYHIGVLNMNSRNIILTMKVNVLAKVYDTTKGKKMCSTANGFCRLSFVFPNTQYVILTATGKVDGGSYVEISFLARVLTYILLLGALMIVIYLVLKFLEVHEGGDQNSHAAVDVTYRTSNVVARQTETQPLMQVETNRLTYGTNAKDDEEEDSGASSSSSEELYDEKLCCICYDEQRSSFFVPCGHCATCYDCAQRILDEESIVCPICRRLIHKVRRLYHN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00410 399 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 398 - -
Gma04g00410 399 Pfam Domain of unknown function (DUF4793) 170 271 IPR032010 -
Gma04g00410 399 Pfam Domain of unknown function (DUF4792) 77 145 IPR032008 -
Gma04g00410 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 398 IPR013083 -
Gma04g00410 399 Pfam Zinc finger, C3HC4 type (RING finger) 344 393 - -
Gma04g00410 399 SMART ring_2 347 386 IPR001841 -
Gma04g00410 399 SUPERFAMILY RING/U-box 338 393 - -
Gma04g00410 399 ProSiteProfiles Zinc finger RING-type profile. 347 387 IPR001841 -
Gma04g00410 399 PANTHER OS05G0521000 PROTEIN 15 398 IPR044586 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00410 Gma-Chr4 3561682 3564283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00410 330 397 C3H Transcription Factor Family AT1G62370 33.824 1.25e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00410 - - gmx:100777075 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00410 04 3561682 3564283 Gma04g00410 04 3561682 3564283 ECH
Gma04g00410 04 3561682 3564283 Gma06g00396 06 3412361 3416700 GST