Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00409 ATGGGGAGAGTGAAGCTTCCGATCAAAAAGATTGAGAACACAACCAATAGGCAAGTCACTTTCTCCAAGAGGAGGAATGGACTCATCAAGAAAGCTTACGAACTTTCTGTTCTTTGTGATGTTGATGTGGCTCTCATCATGTTTTCCCCATCAGGAAGAGCCACTTTCTTCTCTGGCAACAAAAGCATTGAAGAAATTCTAGAACGATATGTTAATCTTTCGGAGGGTGAACACGGAAGGATGCATAATAAAGAGCACATTCAAAAGTTGCTTAGTAAGTTGAAAGATGAAGCTGGTCAAATATGTCAAGCCCCTAGGTATTATTTGCTTCAGGATCTTCGAAGAGAAATTTTCACTTGCAAGTCTCAATTGGAAGAGATGGAGAAGCGACTAAGGATATTTGAAGGTGATCCTTCAGAGATCACAACGCTCAGCGAGGCTGAATATCGTGAATATGTCCTTCGGGATACTCTAAAACAAGTGCAACTGCGAAAGTGTGTTTTGGAGGAGTACAATTCTCATGCCACTCATTCTCCACAGGTACATGCTGCAAAAACTGTAGATGTAAATGGATTTATTTCCAGAGCCTCAAAGAACCCAGTAGATTGGTTTCCACAGGGAGATCCACTACATGTCCAGACTCTGAACTTTGCGAATGTTTATGACACTGCTCTTGTCAGAGATCAACAATCACATCATTGCACGGTTGTTGATATGTTAACACCAACTTCGACCCTTCTGCATTCCGCAAACATGGATCTGAATGGCCAAATGAATCCGAGGAGTAGTTTAGACGCTGGCATTAGTAATACATTACATCCCCAGTTTGGACAAGCTATTCACACCAATTCGTCCTCTTGGCAGCATCTTAATCCTTTAGGGAGTAGAACTTTATCGATTGCAGAGACAAGGGAAGTGCAACTCTTGAACAGTGTTTTTCTCAATTTACCCGGTCAAACATCTTAA 966 0.4161 MGRVKLPIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRATFFSGNKSIEEILERYVNLSEGEHGRMHNKEHIQKLLSKLKDEAGQICQAPRYYLLQDLRREIFTCKSQLEEMEKRLRIFEGDPSEITTLSEAEYREYVLRDTLKQVQLRKCVLEEYNSHATHSPQVHAAKTVDVNGFISRASKNPVDWFPQGDPLHVQTLNFANVYDTALVRDQQSHHCTVVDMLTPTSTLLHSANMDLNGQMNPRSSLDAGISNTLHPQFGQAIHTNSSSWQHLNPLGSRTLSIAETREVQLLNSVFLNLPGQTS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00409 321 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Gma04g00409 321 Coils Coil 110 130 - -
Gma04g00409 321 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Gma04g00409 321 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma04g00409 321 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 1 298 - -
Gma04g00409 321 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Gma04g00409 321 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma04g00409 321 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gma04g00409 321 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma04g00409 321 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma04g00409 321 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma04g00409 321 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00409 Gma-Chr4 3554345 3558500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00409 1 165 Type I MADS-box Gene Family AT1G77980 46.961 2.68e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma04g00409 SRF-TF 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00409 - - gmx:100776548 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00409 04 3554345 3558500 Gma04g00409 04 3554345 3558500 ECH