Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00388 ATGGAAGAAGCAGGTTTAGGAGATTGTTGTTCCTCGAATTCGACGATTACGAGGAAGAGCGATAAGCGAAAGCAGCAACACCAACAACAAGAGAAGCCAtacagaggaataaggatgaggaagtggggcaagtgggtggcggagattagagaacccaataagcgttcgaggatctggctgggttcttacgccacccccgtcgccgccgcacgcgcctatgacaccgccgtcttccacctccgaggcccttccgctcgcctcaacttccccgaattGCTGTCCCAGGACGACGACGTTTCGACCCAACAACAGGGCAACATGTCCGCCGATTCAATTCGCAAAAAAGCCACCCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCAGCAATCCTCGTCCTCACACTCCGCTAATTCCAGCCACGTCAGCAGCTCTGACAAACCAGACTTGAACGAGTATCCCAAACCTGAAGATTACTGGAGTCGTGGACTGGTAGCTACGTAG 510 0.3431 MEEAGLGDCCSSNSTITRKSDKRKQQHQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFHLRGPSARLNFPELLSQDDDVSTQQQGNMSADSIRKKATQVGARVDALQTALQQSSSSHSANSSHVSSSDKPDLNEYPKPEDYWSRGLVAT 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00388 169 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Gma04g00388 169 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Gma04g00388 169 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Gma04g00388 169 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Gma04g00388 169 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700|GO:0006355
Gma04g00388 169 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Gma04g00388 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 160 - -
Gma04g00388 169 MobiDBLite consensus disorder prediction 17 34 - -
Gma04g00388 169 MobiDBLite consensus disorder prediction 129 149 - -
Gma04g00388 169 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Gma04g00388 169 MobiDBLite consensus disorder prediction 129 169 - -
Gma04g00388 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 160 - -
Gma04g00388 169 MobiDBLite consensus disorder prediction 1 34 - -
Gma04g00388 169 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00388 Gma-Chr4 3329200 3330173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00388 32 160 AP2-EREBP Transcription Factor Family AT2G23340 58.273 4.95e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma04g00388 AP2 2.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00388 K09286 - gmx:100801528 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00388 04 3329200 3330173 Gma04g00388 04 3329200 3330173 ECH