Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00377 ATGCAAGGGCAGAGAGGTACAGTTGTTTCAATGCCTGAAACCTTAGAATTTGATTGTGGATCTGCATCTGGCAATTCTACTGCGGATCCGCAAATTTGCTGGAATAATGTGAATCCTGCAGAGAATCAAATTCCTGATTATATACTTTCTCCTTGTGATATGAACTCATCCTATGAGAATTCTATTATTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCTAGTAATACACCAAATGAGATCAACAATAATGAGCAAAAAAGAGAACTTGGATGGTCATCAACCATTACTGCTGGTGCATTGGCTGGTCCAAGCCTAGAAGAAAGGCGCCTTGAACCAACCAATGCTCTTTCACTAGACAATGTCAATACAGGTCCTATCTACATCTGTAGCCCCAATTCTCATTTGATGTCCCAGAATCTCAACTTAAATGCAGGTTTAGCGGACAGTGGCAGTGATGATAGTCAACATCTGGAGCTCCCTAACTTAAACAAGTCTAGTGGGTCAGCAAACGAGTGTATACCACCTAATGTTGGATCTGGTTCTTTTCTGCTTCCTTCTGGAAATAATGCCTTCCTGGTAGAAGATACTGATGGTAGGCCTAGTTGTTCTCTTGATACTCGGCGGGTCTCTTGTAAACGAAAGGCTGTTGAAGGAAATAATGGACAATCGTCAGATGCTGGGAGTTCTAGCTACAGTCAGCATACGGATGGTAGTGCTTGGCACACCATTCCTACTCAGGATAATGCTGGAAGCAGTTCGAGAAGATCTATTCCCTCAGAAGAGGTAAACGCAAGACTTGGCCTGGGTATCGGGGATGAAGCATCTGAAAATGTTTCTGATTCAAACACTGCAGGATGCTCAGAAAGCTTTCACAGGAATTTCCGTTTGAGGTTAAATCCTTCAAACCCAGCAAATTCTGTTCCTCCCACCGCATTCTCAACTGGGAGCATGATTAGGCATTCTGGTGTTTCTCCATCCTCTCAAGTATCACAAAGGCTTCATTCTGTTGATAATTCTATGAACTCGAGGTCAGCACCACCGATAGATAATGTGGTTCCTCAAAGCCAGCCACATGTAATCCATGTCCCTGCTTTGCCCAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCCAGAAACATCCATTCATCAAACTCAATTATATGCCCAGCCAGGGATCAGGAGGATGCAAGCTCAAGAAGAATGTCCAGAAATATGTTAGAACATCCAGTCTTTCAACCTGCAACTGATTTAAGCAATTTAGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGTAAATTTAAGTATTCCAGGAAATGTTGCTTCATCACAGACTGGATCAAATCCAGCTACCAATCCCTCATCTGCCCCAACTTGGGTTTCTCCTCCTAATCCTCCACAGCATCCACAGAGGTTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCCAGTTCTGATGCTACTGGAAGTCCAAGCAATAATTTTTCTTCCTTGCGCTCTGGTTTTTCTACATCTGAACCAAGGGCGTTATCATCTGGGAGTGGGGCAAACCCGAGATCATCTTCATGGTTGGAGAGGCAAGGAGGTAGTGAATTTGGAATTCCTTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTTTTGGGCCTTATGCGTAGAGGTGGGAACGTGCGATTTGAGGATGTTGTGATCCTTGAGCATCAATCATTTCTTTCTAGAATAGCTGATGTTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCCTATCGAAACTCTTGAAACAGAGAAAACACTCGGTTGAAAAAGGGTCTGAGACTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGGAATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAGCTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACATGA 2124 0.4331 MQGQRGTVVSMPETLEFDCGSASGNSTADPQICWNNVNPAENQIPDYILSPCDMNSSYENSIINHEWQNLSGWSLGEPSSSNTPNEINNNEQKRELGWSSTITAGALAGPSLEERRLEPTNALSLDNVNTGPIYICSPNSHLMSQNLNLNAGLADSGSDDSQHLELPNLNKSSGSANECIPPNVGSGSFLLPSGNNAFLVEDTDGRPSCSLDTRRVSCKRKAVEGNNGQSSDAGSSSYSQHTDGSAWHTIPTQDNAGSSSRRSIPSEEVNARLGLGIGDEASENVSDSNTAGCSESFHRNFRLRLNPSNPANSVPPTAFSTGSMIRHSGVSPSSQVSQRLHSVDNSMNSRSAPPIDNVVPQSQPHVIHVPALPRNRQSFRWSGGSSSRNIHSSNSIICPARDQEDASSRRMSRNMLEHPVFQPATDLSNLVQNPTVRASSSSSVNLSIPGNVASSQTGSNPATNPSSAPTWVSPPNPPQHPQRLSEYVRRSLFSPSSDATGSPSNNFSSLRSGFSTSEPRALSSGSGANPRSSSWLERQGGSEFGIPYSLRTLAVASEGSSRLVSELRNVLGLMRRGGNVRFEDVVILEHQSFLSRIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETLSKLLKQRKHSVEKGSETDAEPCCVCQEDYGDGNDIGTLDCGHDFHSSCIKQWLMHKNLCPICKTTGLAT 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00377 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 706 IPR045191 GO:0061630
Gma04g00377 707 MobiDBLite consensus disorder prediction 434 467 - -
Gma04g00377 707 CDD RING-H2_TTC3 659 701 - -
Gma04g00377 707 Pfam Ring finger domain 660 701 IPR001841 -
Gma04g00377 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 706 - -
Gma04g00377 707 MobiDBLite consensus disorder prediction 221 266 - -
Gma04g00377 707 MobiDBLite consensus disorder prediction 379 401 - -
Gma04g00377 707 MobiDBLite consensus disorder prediction 153 178 - -
Gma04g00377 707 SUPERFAMILY RING/U-box 649 703 - -
Gma04g00377 707 MobiDBLite consensus disorder prediction 223 266 - -
Gma04g00377 707 SMART ring_2 660 700 IPR001841 -
Gma04g00377 707 MobiDBLite consensus disorder prediction 434 538 - -
Gma04g00377 707 MobiDBLite consensus disorder prediction 379 410 - -
Gma04g00377 707 MobiDBLite consensus disorder prediction 489 538 - -
Gma04g00377 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 704 IPR013083 -
Gma04g00377 707 ProSiteProfiles Zinc finger RING-type profile. 660 701 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00377 Gma-Chr4 3232675 3240831 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00377 217 707 C3H Transcription Factor Family AT2G15530 37.143 6.17e-74 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00377 - - gmx:100784575 1386.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00377 04 3232675 3240831 Gma04g00377 04 3232675 3240831 ECH