Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00326 ATGGCAAGTGGGTTTGGGGAATCAACAGGGAGATCACCCCCAAGCCCTTCCTACTTCAACAACAATAATAACAATGATGCTGCCAATTTTGAATGCAACATTTGCTTTGAATTAGCGCAAGACCCGATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCCTGTCTTTACAAATGGCTTCACTTTCACTCACAATCACGAGAATGCCCGGTGTGCAAGGCCCTCGTGGAGGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGAAAGTCGTCGACTGATCCAAGATCAAAATCTATTCCGGGCGATAACATCCCGCATCGTCCGGCTGGTCAGAGGCCTGAAACTGCTCCTCCACCTGAAACAAATCATTTTCATCAACATGGGTTTGGATTTATGGGTGGCTTGGGGGGATTTGCGCCACCGCCGATGGCAACAACAAGATTTGGGAATTTTGCATTGTCCGCAGCTTTTGGTGGTTTTATACCATCCTTATTCAACTTTCAGTTGCATGGGTTTCATGATGCTGCCATGTATGGGGGAGGGGCTGGTTTTCCTCATGGATTTGCCAATACATTTCATGGTGTCCATGCCCATGGATTCCCTCTGCGCACCCATCAAGGGCAACAAGATTATTATTTGAAGAAGCTTCTTCTATTTGTTGTTTTGTGTGTTGTTCTTGCTTTTATATGGCAATAG 696 0.4612 MASGFGESTGRSPPSPSYFNNNNNNDAANFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKSSTDPRSKSIPGDNIPHRPAGQRPETAPPPETNHFHQHGFGFMGGLGGFAPPPMATTRFGNFALSAAFGGFIPSLFNFQLHGFHDAAMYGGGAGFPHGFANTFHGVHAHGFPLRTHQGQQDYYLKKLLLFVVLCVVLAFIWQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00326 231 MobiDBLite consensus disorder prediction 86 123 - -
Gma04g00326 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gma04g00326 231 MobiDBLite consensus disorder prediction 1 20 - -
Gma04g00326 231 CDD RING-HC_AtRMA_like 30 74 - -
Gma04g00326 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Gma04g00326 231 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Gma04g00326 231 PANTHER OS12G0636000 PROTEIN 2 231 - -
Gma04g00326 231 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Gma04g00326 231 SMART ring_2 32 72 IPR001841 -
Gma04g00326 231 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Gma04g00326 231 SUPERFAMILY RING/U-box 29 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00326 Gma-Chr4 2790896 2792705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00326 30 214 C3H Transcription Factor Family AT1G19310 69.474 5.03e-86 253
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00326 04 2790896 2792705 Gma06g00309 06 2703121 2719353 GST