Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00315 ATGACGGAACCTCAGAATCCTTCACCATTGACACATTCTCCAGCGTTAGAAATCACACCTCAACCACTGCTACCTCCCAAAAGGAAACGAAGCCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACGCTGTTGGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAAGGCTTCCAGCGCGACCAGAACCTACAGCTTCACCGGCGTGGCCACAACTTGCCGTGGAAGCTGAGGCAGCGAGGGAGTACAGAGCCGCGGAAGAAAGCTTACGTGTGTCCCGAACCTTCCTGCGTCCACCACAACCCCGCAAGGGCGCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAACACGGTGAGAAAAAGTGGCAATGCGAACGCTGTTCTAAGAAATACGCCGTACACTCCGATTGGAAGGCTCATATGAAAACTTGCGGCAGCAGAGAATACCGATGCGACTGCGGAACCTTGTTCTCTAGGAGGGATAGTTTCATCACGCACAGAGCATTTTGCGATGTCTTAGCGCAAGAGAGCGCGAGGGCCCAGGCCCAGGCCCAAGGCCAAGGTGGTAGCAATAGCAAAGTGGTTGAGGCTTCTTCGCCGCCTACGCCTCCACTTACTCCCTCCGCGTCTGTGGTGCCTCCAACTTTGTCCATTCAGAGCTCAGAAATTCCGGAAAACCCATCAACGAAGCTGTCACCGACGTCTCCAAACGCAACAGCGTGTTTCGTGACAAGCAGCAGCAGCACCCCTTCCAATTCGACTACTTGCACCACTGTTTTTGCTAGTGTGTTGGCACCGTCCCCAACAACTCCACAATCACCATCAAATTCAACTTCCTCTTTCACCAACCTCATCTCAAACTTGGCTCGCTCGCAGAACCCCAATACCATTATGAGAGAATCCACGTCCCTCTCCCTCTCCACACCACTCTATCTCTCCAACAATGACCCTCTTCATTACACTGCATCACCCCAACCTGCACTATCTGCCACTGCACTACTCCAGAAGGCAGCGCAAATGGGTGCTTCAAATGCATCCCTTCTTCGTGGCCTAGGCTTAGCAACAACAACATCATCATCATCATCCTTCGGTAAAGACGAGGGTTTTAACATTAATGCAACCACAACACTACAATGGAACGGACAAGTGAAGCAAGAGAATCATCCAGTGGTGGATAACCTTGGGCTTGGGCTTCTCTGTGGGAGTGGAAGTGTGCCAGATGTGATGATGGCCCCTTCTACCCCATTTGTGGGCCAGCCCATGACCCGTGATCTTCTTGGTCTGAGCATCGGTGGCGGAGGAAGCAGGGGTGGTCTCTCTGCTTTACTCACTTCTTTTGGAGGAAACTTTGATTCACCCGGTGAAGGAGGAGTTCACCGGTAG 1413 0.5258 MTEPQNPSPLTHSPALEITPQPLLPPKRKRSLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSTEPRKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWQCERCSKKYAVHSDWKAHMKTCGSREYRCDCGTLFSRRDSFITHRAFCDVLAQESARAQAQAQGQGGSNSKVVEASSPPTPPLTPSASVVPPTLSIQSSEIPENPSTKLSPTSPNATACFVTSSSSTPSNSTTCTTVFASVLAPSPTTPQSPSNSTSSFTNLISNLARSQNPNTIMRESTSLSLSTPLYLSNNDPLHYTASPQPALSATALLQKAAQMGASNASLLRGLGLATTTSSSSSFGKDEGFNINATTTLQWNGQVKQENHPVVDNLGLGLLCGSGSVPDVMMAPSTPFVGQPMTRDLLGLSIGGGGSRGGLSALLTSFGGNFDSPGEGGVHR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00315 470 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Gma04g00315 470 MobiDBLite consensus disorder prediction 1 30 - -
Gma04g00315 470 Gene3D Classic Zinc Finger 110 190 - -
Gma04g00315 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 463 - -
Gma04g00315 470 MobiDBLite consensus disorder prediction 1 15 - -
Gma04g00315 470 Gene3D Classic Zinc Finger 36 102 - -
Gma04g00315 470 Pfam Zinc-finger of C2H2 type 56 78 - -
Gma04g00315 470 MobiDBLite consensus disorder prediction 191 222 - -
Gma04g00315 470 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 25 463 - -
Gma04g00315 470 MobiDBLite consensus disorder prediction 191 209 - -
Gma04g00315 470 SUPERFAMILY beta-beta-alpha zinc fingers 55 153 IPR036236 -
Gma04g00315 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Gma04g00315 470 SMART c2h2final6 56 78 IPR013087 -
Gma04g00315 470 SMART c2h2final6 97 127 IPR013087 -
Gma04g00315 470 SMART c2h2final6 132 152 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00315 Gma-Chr4 2683944 2687186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00315 27 455 IDZ Gene Family AT5G66730 49.053 1.17e-126 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma04g00315 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00315 K25869 - gmx:100800089 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00315 04 2683944 2687186 Gma04g00315 04 2683944 2687186 ECH
Gma04g00315 04 2683944 2687186 Gma06g00300 06 2612948 2615792 GST