Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00275 ATGTCCAACTCTATTACCTATCATCAAAACCAATTTGAGAACCAAGAGCTTGATGCTTATGGCTCTTCTATGAGGCTCAACAATGCATTTCCTGAGGCCTTGGGAGCATTTCCTACTAGCATTGGAGTAGTTGCTGAGGGCTCTGAGATAAGCCACACTAGGCATTTGATGGATCTTCTTGGAGCAGCAAATGAGAGCAATCACCACCAAACTGCTCAAGGGCTTTCTCTTTCTTTAGGCTCTCACATGCTTGTTCCTTCTGATGAATACAGGCATCCCCACCAAAGACCCTTAAACCCGGGTCTCATCAACCCCAATTACTTCATGTCTGGACAAGAGGCACGTGAGCCTTGTAACAACCCACCTGTGGAGCAGCATAATATAACCAGTGACTACTTTTACAATACTGGGAGTGGCACTTTTGCTTCTTCTTCCCCTTTGAACAACCGTTCTCCTAATTCCACCAGCTCTTATGCTGCTGTCATTGGGAACTCCAGGTACCTCAAACCGGTTCAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGGTTGATAGAATCAATGAGAAGTATGCTGAGAAGTTGTTTCGTGGGAGTAGAGGCAGTGCTAGGACACTTTCCTCAGAGTTGAAGGCAGAGTTGGGGAATAATGGTCATTTATTGGCTGACAAACATGAACATCAAATCAAAATTGCACGGTTGATTACTTTATTGGATGAGGTTGAGGGAAGGTGTGAGAAATACTACCATCAAATGGAAGAAGTGGTGTCATCTTTTGAGATGATAGCAGGTTTGGGAGCTGCGAAGTGTTACACTGCTTTGGCACTTCAAGCCATGTCAAGGCATTTCTGCAGCTTGAGAGATGCCATATTGTCACAAATAAATGCTGAGAAAAGAAAACTCTTTCAGGATTTACCTAAGATCAGTAGTGGGTTGTCTCAACTAAGCTTGTTTGATAGAGACAGTAGACAGAGTAGAATGTCTCTCCAACAACTTGGGGTGATCCGAAGCCAACGCCAAGTTTGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTGGCTATTCTTCGTTCTTGGCTCTTCGAGCACTTTCTCCACCCTTATCCTAATGATTCTGAAAAGTTAATGCTGGCATCTCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCACGAGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAGGAGTTTGGAGAGTTTTCTGAAGACTCCAACCCGGCTGGTAACAACTACTTGACGAGGGAAGATACCACGGATTGTGTAGAGGATTGA 1323 0.4392 MSNSITYHQNQFENQELDAYGSSMRLNNAFPEALGAFPTSIGVVAEGSEISHTRHLMDLLGAANESNHHQTAQGLSLSLGSHMLVPSDEYRHPHQRPLNPGLINPNYFMSGQEAREPCNNPPVEQHNITSDYFYNTGSGTFASSSPLNNRSPNSTSSYAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFRGSRGSARTLSSELKAELGNNGHLLADKHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLFDRDSRQSRMSLQQLGVIRSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGEFSEDSNPAGNNYLTREDTTDCVED 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00275 440 Pfam Homeobox KN domain 361 400 IPR008422 GO:0003677|GO:0006355
Gma04g00275 440 ProSiteProfiles 'Homeobox' domain profile. 363 404 IPR001356 GO:0003677
Gma04g00275 440 MobiDBLite consensus disorder prediction 417 440 - -
Gma04g00275 440 SMART prehox3 156 294 IPR006563 -
Gma04g00275 440 Gene3D - 339 418 - -
Gma04g00275 440 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 43 422 - -
Gma04g00275 440 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 43 422 - -
Gma04g00275 440 CDD homeodomain 344 405 IPR001356 GO:0003677
Gma04g00275 440 SUPERFAMILY Homeodomain-like 350 411 IPR009057 -
Gma04g00275 440 Pfam Associated with HOX 161 292 IPR006563 -
Gma04g00275 440 SMART HOX_1 344 408 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00275 Gma-Chr4 2399944 2401552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00275 72 419 Homeobox Transcription Factor Family AT1G19700 42.740 3.11e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma04g00275 POX 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00275 - - gmx:100792161 882.478