Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00258 ATGGCTAGAGGaaagatccagatcaagaggatagagaacaacaccaaccgccaggtcacttactctaaacgacggaatggccttttcaagaaggccaacgagcttaccgttctctgcgatgccaaggtttctattattatgttctcCAGCACTGGAAAACTCCACCAGTACATCAGCCCCTCCACCTCAACAAAGCAGTTCTTCGATCAATACCAGATGACTCTGGGAGTTGATCTCTGGAACTCTCATTACGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGAGGTGAATAGGAATCTTCGTAAGGAGATTAGGCAGAGAATGGGAGATTGTCTGAACGAGCTGGGCATGGAAGATCTCAAGCTCCTTGAGGAAGAAATGGACAAGGCCGCCAAGGTTGTTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAGAGGAAAAAGTTTAATAACGAGAAAGAAGTGCACAACAGGCTCCTGCATGACTTGGATGCAAAAGCAGAAGATCCACGTTTTGCATTGATAGATAATGGAGGGGAGTATGAGTCTGTGATCGGATTCTCAAATTTAGGTCCACGCATGTTCGCATTGAGCATACAACCAAGCCATCCTAGTGCCCATAGCGGAGGAGCAGGCTCTGATCTTACCACTTACCCTTTACTTTTCTAG 684 0.364 MARGKIQIKRIENNTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHQYISPSTSTKQFFDQYQMTLGVDLWNSHYENMQENLKKLKEVNRNLRKEIRQRMGDCLNELGMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLLHDLDAKAEDPRFALIDNGGEYESVIGFSNLGPRMFALSIQPSHPSAHSGGAGSDLTTYPLLF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00258 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gma04g00258 227 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma04g00258 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma04g00258 227 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma04g00258 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma04g00258 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma04g00258 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma04g00258 227 PANTHER APETALA3 1 224 - -
Gma04g00258 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma04g00258 227 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Gma04g00258 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma04g00258 227 Coils Coil 77 111 - -
Gma04g00258 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Gma04g00258 227 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Gma04g00258 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00258 Gma-Chr4 2241461 2245097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00258 1 226 MADS-box Gene Family AT3G54340 55.411 2.77e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma04g00258 K-box 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00258 K09264 - gmx:100809514 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00258 04 2241461 2245097 Gma04g00258 04 2241461 2245097 ECH
Gma04g00258 04 2241461 2245097 Gma06g00239 06 2142419 2145700 GST