Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00234 ATGAATGAGAATCGTTCAGCTAGCATTCTGTTGGACGAATTTGATCATCAGGCCAAAGGTTCGCGTGTTACTGTTACCATTATTACCCTTCTCGAGTATCAGTGTGTTCATGTCCACTACGGCCCAAGATCAATCCCATCCCCATTCAAATTCCAGCTATTGCTTTCTCCTTCCCTCACAATGGGTCAAAGATATGAAAACAATGTTTTCAAGTCTCACATAAGTAATATTGAAGCTGCTCCCGGTATGACCCAAACAGTTCATCTTCCTCCCCCACTTCAAACCGACCCTACCATAAGAGGAAAGCAAAATGGTAAACCAAAAGGTTCAAGAAATGCAAAATCTGCGGCTCACAGACCTTATGCCGATTCCACTAATTCGACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACCCTGGATCTAAATAGAACCGCTGAAATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGACTGATAGAGAAAACATCAAAGAATCATATAAAGTGGAAGGGATGTGATGGGCTTGGACCTCGAGAACTGGAAGACCAAGTTAATAGTTTAAAGGCTGAAGTTGATAGTCTATATGCCGAGGAATGCAAACTTGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGTGAAAGCTCTCAAAAGTACCTCTTTATAACCAAGGAAGATATTCTTGGCCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTCCATCGAGGTTCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATATATTTGTACCTCTTGAGCAAGGACGACCACAAGTTTGAGGATGATAGTGCCAAACCGATGAAATTAACAAATCCATCATGGAATAGTGATCTCTACAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAAAATGATGAAAATAATCCTTCTGAGCGTTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACTGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGGAAGGAGTAGTTGGTTCTGATAGACGTGCTTCAGACGATTAA 1239 0.4084 MNENRSASILLDEFDHQAKGSRVTVTIITLLEYQCVHVHYGPRSIPSPFKFQLLLSPSLTMGQRYENNVFKSHISNIEAAPGMTQTVHLPPPLQTDPTIRGKQNGKPKGSRNAKSAAHRPYADSTNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIKWKGCDGLGPRELEDQVNSLKAEVDSLYAEECKLDDCIRKKQELLRNLEESESSQKYLFITKEDILGLPCFQNQEIIAIKAPKASSIEVPDPDEELGFRQRQYKMIVRSAIGPIYLYLLSKDDHKFEDDSAKPMKLTNPSWNSDLYRKRGVGLLESQNDENNPSERFSLQGSQAFGIQEITPTDFEMEDDYWFQSDPGVSQTELEGVVGSDRRASDD 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00234 412 CDD E2F_DD 210 317 IPR032198 GO:0046983
Gma04g00234 412 Pfam E2F/DP family winged-helix DNA-binding domain 136 199 IPR003316 GO:0005667|GO:0006355
Gma04g00234 412 Gene3D - 206 317 - -
Gma04g00234 412 MobiDBLite consensus disorder prediction 90 127 - -
Gma04g00234 412 PANTHER TRANSCRIPTION FACTOR E2FC 57 399 - -
Gma04g00234 412 Pfam E2F transcription factor CC-MB domain 215 314 IPR032198 GO:0046983
Gma04g00234 412 Gene3D - 129 201 IPR036388 -
Gma04g00234 412 SUPERFAMILY E2F-DP heterodimerization region 210 317 IPR037241 -
Gma04g00234 412 SUPERFAMILY "Winged helix" DNA-binding domain 134 197 IPR036390 -
Gma04g00234 412 SMART E2F_TDP_2 134 199 IPR003316 GO:0005667|GO:0006355
Gma04g00234 412 Coils Coil 229 249 - -
Gma04g00234 412 MobiDBLite consensus disorder prediction 391 412 - -
Gma04g00234 412 PANTHER TRANSCRIPTION FACTOR E2F 57 399 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00234 Gma-Chr4 1995996 2004017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00234 99 399 E2F-DP Transcription Factor Family AT1G47870 51.325 4.13e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma04g00234 E2F_CC-MB 9.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00234 K06620 - gmx:100811650 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00234 04 1995996 2004017 Gma04g00234 04 1995996 2004017 ECH
Gma04g00234 04 1995996 2004017 Gma06g00216 06 1896506 1900247 GST