Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00223 ATGAAAGATGGGCTCACAGCACCTTCTCGGGTGCAGGAGCTGGTCTCTGTGATGCAAAAGGAGAAAGATAGTGAGGTTAAAAATGCTGCTGATGTGACAAGGCAGTGGGCTGCTGTTGCAAGCATTATTGCTGCTACAGAGAATAAAGATTGCCTTGATCTTTTTATTCAATTAGATGGACTTTGCTTCATTAATAGATGGTTAAAGGATGCCCAAGATTTTGGGGTTGATGCAAACGACAGCTTCGTTGAAGAATCAATCACTGCAATGTTACGTGCAGTTGAAAAGCTGCATATAGACAGTGAGAAGTCAATGTCTTCAGGAATTCGCATCACTGTAAGTAATCTTCTTGGCCATCATAGTGCTAGGGTTCAGGATAGAGCAAGAACGTTGTTTGACAGCTGGAAGGGAGTTGGAAATGGTGATACTGAATCTCATGATGTGGAACTTGCTAAGGTTGACAATTCAAGTGACAAGATTGTCAGGGAGGAAACACAGCCATCTGCTGCAAATGAAGCTGGCAATGATAATGATCCTGCATCAGGACTAATTGGAAGTGAGAAATCTCTGTTGAAAAGCTCGGATAATTTACCGGTACATAGTTCTGATAATGTGCTCCAGTTATCTGCCAGTGTGGAATGTATTGACATCAAAGTGGGATCGGAAAACCATGTTGCTGGTGTTCCATCTTCTGCTCAAGAAGTTGCTCCCGCTCATGAAGGATTGCCTATATGCACTACAGGTGAGACCACTTCGGCTGGAACCTGTAACTTTCCCATTCCAAATCAAAGCAGTTTTGAAGGACAGTCAGATGTGGTACAGTTAAGTGACTTAGCTAAAGTGGAAAAGCAGGAGCAAAACATTAATGACCCTCCAGAAAAATTAGGAGCACCAGAGATCTGTTCTGTGTCCTCTAATAAGCCAGAGTCTGAGCCTGTTTCCATGGTTGCTTGCGAAGCAAAAGCACCAGAGTCTGTGAAAAACCCAGCTTTAGAGCAAAATGTTGAACACAATGAGGATGATGTTTGTCGTAATTTAACTAATTCTGCTAGTATGAGGACACCTGCATCTGATAGGAGTGGGGAAGATGATGTAACTAGCATTACACAAGTTTTTAAAGCTACAGAAAATGATAATGATTGTTGTTCTAATGCATTGCAGGGCGCATCAGTCAGTGACAGTAACTTGGGAAAGACTGAGGTGTTAGACGTGTCTGTCTTTGGAACAGAATATGTCACAGCATCAAAGGAAGGCAAGGGCCATGAAGAAGATACATCAATTGGTTCTGATTCTAGTAAACCCGGAATAGATTTCAGAAGCTCTAACATAATTGACAAGAGAGGTTCTGACAATGAACTTGACTGTGGCATTGTGGATGCTTTAGAATTTGCTCGAAAAATTGCTCAGGAAGTTAATAGAGAAGTCAGCTGTTCTTCAGAAAAAGTCTCAGAACACAGAATCAGGCAACCATGCAGTCCAGATTCTGTAAGAAAAGAGGACGAGCTCACTCCTGTCCCACCCAAGGAGGTTTCCTCCAGACAAAGCCATGCTACTGAGGCATGTTCAATGGAGGGGCATGTGAGTATTTTAGACAACAATGAGGCTGAGCCGGAATGCAGACCCTATGTGGTGTCCTTAGAGGTGACTGAAAAAGCTCAAGATTCAGGAGGTAATTCAGAGAAACGACTCTGCGGCTTTGATCTCAATGAAGTTGGTGCTGATGATATGGATGTTTCTGTAAATACTATGTCTACCCCAATACCAGTTGTCTCTGCTTCAAGGCCTGCACCAACTCCTGGGTTGACTGGGGCCCCTTTGCAGTTTGAGGGAACACTTGGATGGAAAGGGTCAGCTGCCACCAGTGCCTTTCGACCTGCGTCGCCTCGTAAAAATTGTGATAATGATAGGAATCTTTCTGTTGATATGAACTTTGATACTTCCAAGCAGAGGCAGGATTGGCTTGATTTTGATCTAAATGTGGCTGAGGGTGAAGAAGGCAATGTAAAACCTACTGCTGAATCTTCAGGCAGGCCTTCTGGGCAATCGTCATTTGAATTTAGTCCTAAAAAATCAAGCAGGCTTGAATTTGATTTGAACAGTACCGGTGATGATGGTGACACCCAACCTTCAGATCAAAGAATGGAGGGACAACTCTTTCTTGGAAGAAATGGCTGTTGGAGCCCATCCCCTGCATCGTCGTCCTCATCAATGCAGCCATCTGTTAGAAACATTGATTTGAATGACAGGCCGTGCCTTCAAACCGATTTGGTAGACCAGGGCCCCATTAAGTCTGCCCATCTTATCAATGCATTTGGTTCTAAATCATCAAATGCTCCTGTTATCTCTCTTCTGGGTGCCAAGGTAGAAGTTGGTAAAAAAGAATGTGTTCCTCAAAGGTTGTCTTTGCAGAATGGCAAGGCTACTGAACCTGCAATAGAACTAACAATGTCAAGAGCAGGTAGCGTTTTAGGGATGACCCCAACAGTACCCTTCAATCATTCATCTGTTTTTGGCTATAATGGAGTGGCGTCAGCATCAGTGACACCCGCAATGTCTTTTTCATCAGCCATGTACGGATCAGGTGGCACAATTCCATACATGGTGGACTCAAGAGGAGCTCCAGTTGTCCCTCAAGTGGGTGGATCTTCATCAACTGTCCTTTCATCTTACTCTCAGCCACCAATCTTTATGAACATGGCTGGTACACAACTTGGTCTGAATGGATTTGGACCTTCACGTCCTAACTTTGACCTGAACTCTAGCTTCATGATTGAGGGTGGGAATAGAGACACATTGGCTGCAAGGCAATTTTTCTTTCCTGTTCAGGGAAGGGCTGTGGAGGAGCAAGTAAGATCCATGCCGCAACCCTCCAGTTCGGGGGTTAGTGGGAAACGAAAAGAACCAGACAGTGGTTTGGAACCCTACCCATTTATCTACAAAAATCCGCAACCTCCATGGAAGTAG 2964 0.441 MKDGLTAPSRVQELVSVMQKEKDSEVKNAADVTRQWAAVASIIAATENKDCLDLFIQLDGLCFINRWLKDAQDFGVDANDSFVEESITAMLRAVEKLHIDSEKSMSSGIRITVSNLLGHHSARVQDRARTLFDSWKGVGNGDTESHDVELAKVDNSSDKIVREETQPSAANEAGNDNDPASGLIGSEKSLLKSSDNLPVHSSDNVLQLSASVECIDIKVGSENHVAGVPSSAQEVAPAHEGLPICTTGETTSAGTCNFPIPNQSSFEGQSDVVQLSDLAKVEKQEQNINDPPEKLGAPEICSVSSNKPESEPVSMVACEAKAPESVKNPALEQNVEHNEDDVCRNLTNSASMRTPASDRSGEDDVTSITQVFKATENDNDCCSNALQGASVSDSNLGKTEVLDVSVFGTEYVTASKEGKGHEEDTSIGSDSSKPGIDFRSSNIIDKRGSDNELDCGIVDALEFARKIAQEVNREVSCSSEKVSEHRIRQPCSPDSVRKEDELTPVPPKEVSSRQSHATEACSMEGHVSILDNNEAEPECRPYVVSLEVTEKAQDSGGNSEKRLCGFDLNEVGADDMDVSVNTMSTPIPVVSASRPAPTPGLTGAPLQFEGTLGWKGSAATSAFRPASPRKNCDNDRNLSVDMNFDTSKQRQDWLDFDLNVAEGEEGNVKPTAESSGRPSGQSSFEFSPKKSSRLEFDLNSTGDDGDTQPSDQRMEGQLFLGRNGCWSPSPASSSSSMQPSVRNIDLNDRPCLQTDLVDQGPIKSAHLINAFGSKSSNAPVISLLGAKVEVGKKECVPQRLSLQNGKATEPAIELTMSRAGSVLGMTPTVPFNHSSVFGYNGVASASVTPAMSFSSAMYGSGGTIPYMVDSRGAPVVPQVGGSSSTVLSSYSQPPIFMNMAGTQLGLNGFGPSRPNFDLNSSFMIEGGNRDTLAARQFFFPVQGRAVEEQVRSMPQPSSSGVSGKRKEPDSGLEPYPFIYKNPQPPWK 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00223 987 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 987 - -
Gma04g00223 987 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 50 145 IPR035441 -
Gma04g00223 987 ProSiteProfiles TFIIS N-terminal domain profile. 62 142 IPR017923 -
Gma04g00223 987 MobiDBLite consensus disorder prediction 482 515 - -
Gma04g00223 987 MobiDBLite consensus disorder prediction 414 443 - -
Gma04g00223 987 Pfam TFIIS helical bundle-like domain 90 136 IPR017923 -
Gma04g00223 987 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 987 - -
Gma04g00223 987 MobiDBLite consensus disorder prediction 482 506 - -
Gma04g00223 987 MobiDBLite consensus disorder prediction 664 712 - -
Gma04g00223 987 MobiDBLite consensus disorder prediction 948 987 - -
Gma04g00223 987 MobiDBLite consensus disorder prediction 156 186 - -
Gma04g00223 987 MobiDBLite consensus disorder prediction 672 689 - -
Gma04g00223 987 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 6 140 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00223 Gma-Chr4 1898262 1901225 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gma04g00223 Med26 4.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00223 - - gmx:102669997 1944.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00223 04 1898262 1901225 Gma04g00223 04 1898262 1901225 ECH