Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00206 ATGGTTACCACCACCGTTGATTCTTCCTCTAACCATTACTCACCCACTGCTGCTACTGCTGCCGCTGACACCTCTAATAATTTCCCGCGAAAAAACCTGCCATCCCCGTGGGCCCAGGTAGTTCGCGGTGCTGACGCTGAACCTAACCATCAATCGCCGCCATCTTCTTCCTCTTCCTCGTTCTCGTCCCTCGATTCCATTAATTCTAACGGTCCCGCCGTTCAAACAAGCGATACCACCGTGAAACCTGCGTGGAAGAAACCGGAGTCCAATGGCGTCTCGGAAGTTGGGCCTGTAATGGGCGCTCATTCTTGGCCCGATTTATCTGAGTCCACCAAGCCCACCGCTAAATTGACATCTGACTCCTCTGTTAAGACTGCTGCTGATGAAGAATCACTCACCACCACTCCTCAGGATCCTGTTAATTCAGACTCCCCTCAGAAACAAGCCATTGGTAATGCAAACCCTAGTCCTACTCCTGCAATGAACTATGGTATGGCTAATCGACAAAGATCAATGAAGCAGCGTGGAGGGTCAAATGGCTATAATGTTGGGTCTGGTCCTGTTCAGAACAACTTCTCCGGTGCTACCCAGAATCTTCCTCCACCGCCACCACCGCCCCCCTTTCCTGTGCTTCCGATGCCTCCAAGAACATTTGCCCATGGGATACCAGGGGTTCCAGTTCCTACTCCAAGGGATCCTTACAGGAACAATAACTGGGATGCAAGACCTCCGCATGGGGGTTTTATGCCACCAATGAGTGAGCATCGGAGTCCCTCTCGCAGGGGCAATGCTGGGCACCATCCACGTGGAGACGGTCCCTATCATAACAGTTATGGCAGCAGGCGTGATCAGGATCGTGGAGGTTATGCAAATACTAGAGATGCTCATGTAAATCAACAGAGGATGCCTCCAAGGGGATTAATGAGGCCCCCGCCACCTAATCCTGCTCCATTTATGGGGCCTCAGCCTATGCGACCTTTTGCAAACCCTGCTGGGTTTCCTGAATTCTATTATTTCCCAACGCTACAATTTGAACCCTTTGGGGGCATGCCATTTTTCACACATGCACCTCCTCCTGCAATGTTCTTCCCAGTTGCAGAAACTCCTCTCACCAATACAATAGCCAACCAAATTGATTATTACTTTAGTGATGCTAATTTAGTGAAGGATGAGTATTTAAGGTCCAACATGGATGAACAGGGATGGGTTCCTATTACTCTGATTGCAAGCTTCCCAAGGGTTAGAAGTTTGACAAGCAACATTAAGTTGATATTGGATTCATTGAGAACTTCCACTGTCGTGGAAGTGCAGGGGGACAAGTTAAGGAGGTGCAATGAGTGGATGAAGTGGCTTCCCTCCGCCCAGCTTCGGGCCAACTCTGGTTCAATATCCCCTAGCGGATCAAGTTCTAATAACCTAGCAGCTGATTTTGAAAAGATCACAGTGGATGAAGCTATTTCACATAAAGTTAACACTGAGCCTACCACAAATGAAGATGCTGCAGGAGAGTCCTCAACTCAGTCCCAAGTCCCAAATGATGCTACTGTGAGCAGCAATTAA 1563 0.4901 MVTTTVDSSSNHYSPTAATAAADTSNNFPRKNLPSPWAQVVRGADAEPNHQSPPSSSSSSFSSLDSINSNGPAVQTSDTTVKPAWKKPESNGVSEVGPVMGAHSWPDLSESTKPTAKLTSDSSVKTAADEESLTTTPQDPVNSDSPQKQAIGNANPSPTPAMNYGMANRQRSMKQRGGSNGYNVGSGPVQNNFSGATQNLPPPPPPPPFPVLPMPPRTFAHGIPGVPVPTPRDPYRNNNWDARPPHGGFMPPMSEHRSPSRRGNAGHHPRGDGPYHNSYGSRRDQDRGGYANTRDAHVNQQRMPPRGLMRPPPPNPAPFMGPQPMRPFANPAGFPEFYYFPTLQFEPFGGMPFFTHAPPPAMFFPVAETPLTNTIANQIDYYFSDANLVKDEYLRSNMDEQGWVPITLIASFPRVRSLTSNIKLILDSLRTSTVVEVQGDKLRRCNEWMKWLPSAQLRANSGSISPSGSSSNNLAADFEKITVDEAISHKVNTEPTTNEDAAGESSTQSQVPNDATVSSN 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00206 520 Gene3D - 365 453 IPR036388 -
Gma04g00206 520 PANTHER LUPUS LA PROTEIN-RELATED 6 517 IPR045180 -
Gma04g00206 520 MobiDBLite consensus disorder prediction 1 33 - -
Gma04g00206 520 MobiDBLite consensus disorder prediction 486 520 - -
Gma04g00206 520 SUPERFAMILY "Winged helix" DNA-binding domain 362 453 IPR036390 -
Gma04g00206 520 MobiDBLite consensus disorder prediction 489 520 - -
Gma04g00206 520 Pfam La domain 375 430 IPR006630 -
Gma04g00206 520 PANTHER LA-RELATED PROTEIN 1B 6 517 - -
Gma04g00206 520 MobiDBLite consensus disorder prediction 1 216 - -
Gma04g00206 520 MobiDBLite consensus disorder prediction 198 216 - -
Gma04g00206 520 ProSiteProfiles La-type HTH domain profile. 365 454 IPR006630 -
Gma04g00206 520 MobiDBLite consensus disorder prediction 49 84 - -
Gma04g00206 520 CDD LAM 375 444 - -
Gma04g00206 520 MobiDBLite consensus disorder prediction 277 291 - -
Gma04g00206 520 MobiDBLite consensus disorder prediction 108 197 - -
Gma04g00206 520 MobiDBLite consensus disorder prediction 228 291 - -
Gma04g00206 520 SMART la 369 445 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00206 Gma-Chr4 1752932 1758604 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00206 K18757 - gmx:100775279 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00206 04 1752932 1758604 Gma04g00206 04 1752932 1758604 ECH
Gma04g00206 04 1752932 1758604 Gma06g00192 06 1676596 1681672 GST
Gma17g02481 17 42867458 42871583 Gma04g00206 04 1752932 1758604 PCT
Gma14g02155 14 52698217 52702624 Gma04g00206 04 1752932 1758604 PCT
Gma04g00206 04 1752932 1758604 Gma17g02481 17 42867458 42871583 PCT
Gma04g00206 04 1752932 1758604 Gma14g02155 14 52698217 52702624 PCT