Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00203 ATGGCTAAAGTCATGTTTGGTTTGGTCTGCAGCTTCCTCGTATTATGCTGTTTCACAATCAACACTAGCGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGAGGTAGCGATGCCTCGGGGACCATGGGAGGAGCTTGTGGGTATGGGAATCTGTATTCGACAGGGTACGGAACTGATACAGCGGCATTAAGTACTGCCATATTTAACGATGGAGCTTCATGTGGGGAGTGTTACAAAATCATATGCGATTATCAAACAGATCCCAGATGGTGCTTGAAAGGAGCATCAGTAACCATAACTGCCACAAACTTCTGCCCTCCCAATTTTGCTCTTCCCAACAACAACGGAGGATGGTGCAACCCACCTCTCAAACATTTCGACATGGCTCAACCCGCATGGGAAAAGATTGGTATCTATCGAGGAGGGATCGTGCCAGTGTTGTTCCAAAGGGTTCCATGCGTGAAGAAGGGAGGGATTAGGTTCAGTGTGAATGGGAGAGACTACTTTGAGCTTGTATTGATCAGCAACGTGGGAGGGGCTGGATCTATTCAATCTGTGTCTATCAAAGGCTCAAAAACTGGATGGATGACTATGTCAAGAAACTGGGGAGCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACCACCGATGGTGTAACTAGGTTTTTCCAAGACGTTGTTCCATCAAATTGGGCTTTTGGCCAGACTTTCCCTACTAGTGTCCAGTTTTAA 771 0.4643 MAKVMFGLVCSFLVLCCFTINTSAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTAALSTAIFNDGASCGECYKIICDYQTDPRWCLKGASVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCVKKGGIRFSVNGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGVTRFFQDVVPSNWAFGQTFPTSVQF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00203 256 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Gma04g00203 256 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Gma04g00203 256 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Gma04g00203 256 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Gma04g00203 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Gma04g00203 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Gma04g00203 256 SUPERFAMILY PHL pollen allergen 160 251 IPR036749 -
Gma04g00203 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Gma04g00203 256 Pfam Lytic transglycolase 65 152 IPR009009 -
Gma04g00203 256 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Gma04g00203 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Gma04g00203 256 PANTHER EXPANSIN 12 256 - -
Gma04g00203 256 SMART dpbb_1 65 153 IPR007112 -
Gma04g00203 256 Gene3D - 163 256 IPR036749 -
Gma04g00203 256 Gene3D - 16 158 IPR036908 -
Gma04g00203 256 SUPERFAMILY Barwin-like endoglucanases 29 181 IPR036908 -
Gma04g00203 256 PANTHER EXPANSIN-A15 12 256 IPR002963 GO:0009664
Gma04g00203 256 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Gma04g00203 256 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Gma04g00203 256 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Gma04g00203 256 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Gma04g00203 256 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Gma04g00203 256 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Gma04g00203 256 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Gma04g00203 256 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Gma04g00203 256 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00203 Gma-Chr4 1735939 1737936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00203 65 256 Expansin Gene Family AT1G20190 82.292 1.61e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00203 - - gmx:100527629 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00203 04 1735939 1737936 Gma04g00203 04 1735939 1737936 ECH
Gma04g00203 04 1735939 1737936 Gma06g00190 06 1661724 1667169 GST
Gma17g02485 17 42895333 42897384 Gma04g00203 04 1735939 1737936 PCT
Gma14g02159 14 52735742 52737646 Gma04g00203 04 1735939 1737936 PCT
Gma04g00203 04 1735939 1737936 Gma17g02485 17 42895333 42897384 PCT
Gma04g00203 04 1735939 1737936 Gma14g02159 14 52735742 52737646 PCT