Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00201 ATGACTCAAGATCTCGAGATGAGGGATCGCTCAACGCCTTCCAACTCTGTTTCTTTGCCTGCTCCATCTACTTTGCAGCATTTGAAGGAGATAGCGTCTCTTATCGAGACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGCGCTGTTCGCCTTACAATTGCGTTGAGGCGGAAATTGACAGCATCCGCTATCTCTTCTTTTCTCGACCTTGTTCTCACTCCAGGCTCTGAAGTTCACGCCAAATTGTCTGCGTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTGGACGCCGCAACATCTGCTATTCAAACCCCAGCCAAACACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAAATACAATGAGGCCAAAGCTTGTTCCTCGGCTAGCATTGTTTGGCTTAAGAACACAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCGTATAGCTATGAGCTTACAGGAGATCTTGCTGAAATTCGGGGCAACCTCCTTGCATTGCACCGATTTGCGACTCTCCGCCATGATGAGCTGGGACAGGAAACACTTCTTAATTTGTTACTTCGAAACTACCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCCAAGGCTCCTCGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTTGGGAAAATTCGGACAATTCAGCTGGAGTATACAGATGCAAAAGAGTCTCTCCTGCAGGCCGCCCGGAAAGCTCCTGTTGCTGCAAGGGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTCATGCAGAAAGGAATGGAGAAAGCTTTAAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGAGACTTGGAACTGTTTAGGAATATTGCAGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGTTTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGCATCTCTCTAGCTGATGTTGCTAAAAAACTGAGGCTGAACTCTGCAAATCCTGTTGCAGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAATGGTTGGATGGTGTCCAAAGAAACTGGAGATATTTACTCCACAAATGAGCCACAGTCAGCCTTCAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCGGTTCGAGCTCTTCGTTTTCCACCAAACACACACAAAGAGAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGATGATTTTTGA 1464 0.4474 MTQDLEMRDRSTPSNSVSLPAPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRRKLTASAISSFLDLVLTPGSEVHAKLSAYLPKEDDHEMEVDAATSAIQTPAKHLLPELEIYCYLLVLLFLIDQKKYNEAKACSSASIVWLKNTNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRFATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSANPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQSAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00201 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 - -
Gma04g00201 487 Coils Coil 454 481 - -
Gma04g00201 487 MobiDBLite consensus disorder prediction 1 20 - -
Gma04g00201 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Gma04g00201 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 487 - -
Gma04g00201 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Gma04g00201 487 SUPERFAMILY "Winged helix" DNA-binding domain 346 421 IPR036390 -
Gma04g00201 487 Gene3D - 129 443 - -
Gma04g00201 487 MobiDBLite consensus disorder prediction 452 487 - -
Gma04g00201 487 Pfam PCI domain 311 416 IPR000717 -
Gma04g00201 487 MobiDBLite consensus disorder prediction 452 480 - -
Gma04g00201 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 487 - -
Gma04g00201 487 SMART PINT_4 345 438 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00201 Gma-Chr4 1723532 1726452 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00201 K03033 - gmx:100787034 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00201 04 1723532 1726452 Gma04g00201 04 1723532 1726452 ECH
Gma04g00201 04 1723532 1726452 Gma06g00189 06 1655488 1658963 GST
Gma17g02486 17 42898576 42903804 Gma04g00201 04 1723532 1726452 PCT
Gma14g02160 14 52738780 52744119 Gma04g00201 04 1723532 1726452 PCT
Gma04g00201 04 1723532 1726452 Gma17g02486 17 42898576 42903804 PCT
Gma04g00201 04 1723532 1726452 Gma14g02160 14 52738780 52744119 PCT