Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00199 ATGCTCGATTCGGTCCTTCTGGCGCTTTTCTTGCCGTGCCTTGGCATGAGCGGGGTTTTTATCGTCTACATGTGCCTTCTTTGGTACGCCACCACCCGGCACCACCAGCAACCCCCCATCGACGGGCAACCGGTGAAGCCCGTCGCTGACAAGGGTCTATCCGCTCTGGAGTTGGAGAAGCTTCCAAGAGTCACCGGCAAAGAACTCGTCTTGGGCAACGAATGCGCCGTCTGCCTCGACGAGATCGAGAGCGAGCAACCGGCTAGACTGGTCCCCGGTTGCAACCATGGTTTTCATGTCCATTGCGCTGACACCTGGCTCTCCAAGCACCCTCTTTGCCCCGTTTGCAGGACCAAGCTGGACCCTCAAATCTTCACTTCCCAAAGCCCTTGCTGA 396 0.5783 MLDSVLLALFLPCLGMSGVFIVYMCLLWYATTRHHQQPPIDGQPVKPVADKGLSALELEKLPRVTGKELVLGNECAVCLDEIESEQPARLVPGCNHGFHVHCADTWLSKHPLCPVCRTKLDPQIFTSQSPC 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00199 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
Gma04g00199 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 123 IPR013083 -
Gma04g00199 131 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Gma04g00199 131 Pfam Ring finger domain 73 117 IPR001841 -
Gma04g00199 131 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
Gma04g00199 131 SUPERFAMILY RING/U-box 59 123 - -
Gma04g00199 131 SMART ring_2 75 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00199 Gma-Chr4 1703267 1704416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00199 1 131 C3H Transcription Factor Family AT5G42200 56.204 9.81e-49 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00199 K19037 - gmx:100776003 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00199 04 1703267 1704416 Gma04g00199 04 1703267 1704416 ECH
Gma04g00199 04 1703267 1704416 Gma06g00188 06 1643408 1643800 GST
Gma17g02488 17 42910480 42911001 Gma04g00199 04 1703267 1704416 PCT
Gma14g02162 14 52765941 52767120 Gma04g00199 04 1703267 1704416 PCT
Gma04g00199 04 1703267 1704416 Gma17g02488 17 42910480 42911001 PCT
Gma04g00199 04 1703267 1704416 Gma14g02162 14 52765941 52767120 PCT