Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00191 ATGCCTCACAATCCGCACACCGTGGTCTACCTCCACGGCACCCTCGATTTGGTAATCGAGGAGGCTCGCTTCCTTCCGAACATGGACATGCTCTCCGAGCGCGTGCGGAGGTTCTTCTCCGCTCTCAACACCTGCAGCGCCTCCATCTCCGGGAAACGGAAGCAGCAACAAGCGCGCCACCGCCACCGCAAAATCATCACCAGCGATCCTTACGTCACCGTGTGCCTCGCCGGGGCCACCGTGGCGCGCACCCGCGTGATCTCGAACTCGCAGGACCCGACGTGGAACGAGCACTTCAAGATCCCGCTCGCGCACCCGGCCTCGCAGGTCGAGTTCTACGTCAAGGACAACGACATGTTCGGCGCCGACCTGATTGGAGTCGCCACCGTCTCCGCCGAGAGGATCCTCTCCGGCGAAGCCATCAGCGACTGGTTCCCGATCATAGGCACGTTCGGGAAGCCGCCGAAGCCTGACTGCGCGGTGCGGCTGGCGATGAAATTCACGAGGTGCGAGGACAGTCCTATGTACCGGGCCGGCACCGAATCGGATCCGGACCGGTTCGTTGTTCGGGAATCGTATTTTCCGGTTCGGCGCGGAGGTTCGGTGACGCTGTATCAGGACGCGCACGTGCCTGATTCGATGTTGCCGGAGGTTGAGTTAGAGGACGGGGTTGTGTTTGAGCACGGGAAGTGCTGGGAAGATATATGCCACGCGATATTGGAAGCGCATCATTTGGTTTACATTGTGGGTTGGTCCATCTACCACAAGGTGAAGTTGGTGAGAGAGCCTACAAAACCCTTACCTAGCGGTGGTAACTTGAGTCTCGGGGAGTTGCTCAAGTACAAGTCGCAAGAAGGTTTGCGAGTTTTACTATTGGTTTGGGATGATAAGACTTCGCACAGCAAGTTTTTCATTAACACGAGTGGAGTAATGCAAACACATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTAGATGTTTGCTGTCACCAAGATATGCCAGCAGTAAGCTTAGCATTTTCAGGCAGCAGGCATGCTTTATGCTATGGTTTAGTAGCTTTCCCAGATTTTGTCATTTTTCTGTTGTTGGCACTCTCTTTACACATCATCAGAAATGTGTGATTGTGGATACTCAAGCACACGGCAATAATCGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCCGAGCATAGAATTTTACGTGATATCGACACTGTTTATCAGGACGATTATCATAATCCCACATTTTGTGCGGGAACCAAGGGTCCAAGGCAACCATGGCATGATTTACATTGCAAAATTGAAGGCCCAGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCCACCAGATGGTCTGAGCTGGGTCGAAAACTCAAGAGAGTATCTCACTGGAACGATGATTCTTTGATCAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCGGAATCAACTCCAATTGATGATCCTGAACTATGGGTTTCAAAGGAAGACGATCCTGAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGTTCTTTGAAGGGATTTCCTAAGGATGTAGTAGTTGCCGAGACTCAGaaccttgtttgtgcaaaaaatttggtcatagacaagagtattcaaacagcatatatacatgcgatcagatctgctcaacattttatttatatcgagaatcaatattttattggatcatcCTTTGCTTGGCCAGCTTACAAAGAAGCAGgtgctgataacctaattcctgtggagttggcactgaagatagtcagtaagataagatccaaggagagatttgcagtttatattgtcatcccaatgtggcctgaaggttccccttcttctacttcagtgcaagagatactcttttggcagGGACaaacaatgaaaatgatgtatgaaatcattgctcgggagttaaaatctatgcagcttgatagtcatccacaagattacctcaatttttactgtcttgggaaccgagagCAGTTGACAACTGAAGTTTCGAGTTCAAGTAGTTCACCTTCAGATAATGGCGAAACGGTTTCAGCCTCACAAAAGTTCcgacggtttatgatttatgtacatgccaaaggaatgattgtggatgatgaatatgtaattcttgggtctgccaatataaatcaacgatctttggctggatccagagatactgagatagcaatgggtgcatatcaaccccatcatacatggAGTCAAAAAAAGGGACATCCACATGGTCAGGTATATGGGTATAGAATGTCTTTGTGGGCAGAACACACGGGGACCATAGAAGCTTGCTTCAAGGAGCCTGAATGTTTGGAGTGTGTGAAAAGTGTGAACAAGATTGCTGAAGACAACTGGAAGAAGTACACAGCTGATGATTATAGTCCATTGCAAGGGCACCTAATGAAGTATCCTGTGTCTGTAAATGCCAATGGGAAGGTAAAGTCCTTACCTGGATTTGAGTCTTTCCCAGATGTCGGTGGCAAGGTGCTTGGCTCCCGGTCTACCCTTCCTGATGCTCTAACTACGTAA 2595 0.3965 MPHNPHTVVYLHGTLDLVIEEARFLPNMDMLSERVRRFFSALNTCSASISGKRKQQQARHRHRKIITSDPYVTVCLAGATVARTRVISNSQDPTWNEHFKIPLAHPASQVEFYVKDNDMFGADLIGVATVSAERILSGEAISDWFPIIGTFGKPPKPDCAVRLAMKFTRCEDSPMYRAGTESDPDRFVVRESYFPVRRGGSVTLYQDAHVPDSMLPEVELEDGVVFEHGKCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTKPLPSGGNLSLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVRCLLSPRYASSKLSIFRQQACFMLWFSSFPRFCHFSVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRILRDIDTVYQDDYHNPTFCAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATRWSELGRKLKRVSHWNDDSLIKLERISWILSPSESTPIDDPELWVSKEDDPENWHVQVFRSIDSGSLKGFPKDVVVAETQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFIGSSFAWPAYKEAGADNLIPVELALKIVSKIRSKERFAVYIVIPMWPEGSPSSTSVQEILFWQGQTMKMMYEIIARELKSMQLDSHPQDYLNFYCLGNREQLTTEVSSSSSSPSDNGETVSASQKFRRFMIYVHAKGMIVDDEYVILGSANINQRSLAGSRDTEIAMGAYQPHHTWSQKKGHPHGQVYGYRMSLWAEHTGTIEACFKEPECLECVKSVNKIAEDNWKKYTADDYSPLQGHLMKYPVSVNANGKVKSLPGFESFPDVGGKVLGSRSTLPDALTT 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00191 864 CDD C2_plant_PLD 8 168 - -
Gma04g00191 864 SMART C2_3c 14 144 IPR000008 -
Gma04g00191 864 PANTHER PHOSPHOLIPASE D 6 863 IPR015679 -
Gma04g00191 864 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 710 737 IPR001736 GO:0003824
Gma04g00191 864 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 150 IPR035892 -
Gma04g00191 864 Gene3D Endonuclease Chain A 534 760 - -
Gma04g00191 864 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Gma04g00191 864 SUPERFAMILY Phospholipase D/nuclease 556 795 - -
Gma04g00191 864 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 367 402 IPR001736 GO:0003824
Gma04g00191 864 SUPERFAMILY Phospholipase D/nuclease 187 472 - -
Gma04g00191 864 PANTHER PHOSPHOLIPASE D 6 863 - -
Gma04g00191 864 SMART pld_4 367 402 IPR001736 GO:0003824
Gma04g00191 864 SMART pld_4 710 737 IPR001736 GO:0003824
Gma04g00191 864 PIRSF PLD_plant 2 864 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gma04g00191 864 Pfam C2 domain 13 147 IPR000008 -
Gma04g00191 864 Gene3D Endonuclease Chain A 225 486 - -
Gma04g00191 864 Pfam PLD-like domain 564 746 IPR025202 -
Gma04g00191 864 Gene3D C2 domain 11 175 IPR035892 -
Gma04g00191 864 Pfam Phospholipase D C terminal 785 854 IPR024632 -
Gma04g00191 864 Pfam Phospholipase D Active site motif 368 402 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00191 Gma-Chr4 1633897 1640422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00191 8 693 Phospholipase D Gene Family (Wang group) AT4G35790 65.292 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00191 K01115 - gmx:100795859 1722.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00191 04 1633897 1640422 Gma04g00191 04 1633897 1640422 ECH
Gma04g00191 04 1633897 1640422 Gma06g00179 06 1571855 1579257 GST