Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00178 ATGGCCTTGGGCACCAGCGCCTTGATCGGAAGGAATGTTCTTGTCTCACCCCCAACCCCCAAAACAACCAAATCATCTACTCCGCTACAATTCCTTTTCAAGAGAAGCATCTTAAATGCTCACAATTCACAAGCTGCTCTAGCTGCCCTTATCTTTTCCTCCGCGAGCCTCTCTGTGACCCCACAAGCCCTTGCCGCTGATAACGTCACCCCTCCCCCTGTAATTGAAGCCCAACAGAGCCAATTAAACCCCTCCAACTCATCCTCCCCTTTCTCACAGAACCTCCTCCTCACAGCTCCAAAGCCACAAGCCTCCTCCGACCTCCCCGAAGGCACCAACTGGCGCTACAGCGAGTTCTTGAACGCCGTCAAGAAGGGTAAAGTCGAGCGAGTCAGGTTCAGCAAAGACGGTTCCGCCCTCCAGCTAACCGCCATTGACGGCCGTCGCGCCTCCGTTATTGTCCCCAATGACCCGGACCTCATCGACATCCTCGCCATGAACGGCGTCGACATTTCCGTCGCCGAGGGCGAATCCCCCAACAGCTTGTTCAACATCATAGGCAACTTGCTCTTCCCCTTACTCGCATTCGCGGGCCTGTTCTTCCTCTTCCGCAGAGCCCAAGGCGGGCCCGGCGGGCCTGGCGGGCTGGGAGGGCCCATGGACTTCGGGCGGAACAAGTCCAAGTTCCAGGAAGTCCCCGAGACCGGCGTGAGCTTCGCTGACGTGGCAGGCGCGGACCAAGCGAAGCTTGAATTACAAGAGGTTGTTGATTTCTTGAAGAATCCCGATAAGTACACCGCGCTGGGCGCGAAGATTCCGAAAGGGTGTCTTTTGGTGGGCCCACCGGGAACCGGAAAGACCCTTCTGGCGAGGGCTGTGGCGGGGGAAGCTGGGGTGCCGTTTTTCTCGTGCGCGGCTTCGGAGTTCGTTGAACTTTTTGTGGGAGTTGGTGCGTCGAGGGTGAGAGATTTGTTTGAGAAGGCGAAGGGGAAGGCGCCGTGCATTGTTTTCATTGATGAGATTGACGCCGTTGGGAGGCAGAGAGGGGCGGGGCTCGGAGGTGGGAATGACGAGAGGGAACAGACTATTAACCAGCTTCTGACGGAGATGGATGGCTTTTCTGGCAATTCTGGTGTTATTGTTTTGGCTGCCACTAACAGACCGGATGTTCTTGATTCGGCGTTGTTGAGGCCTGGCCGGTTCGACAGGCAAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATTCTTCAGGTGCATTCTAGAGGAAAAGCACTTGCAAAGGATGTTGACTTTGAAAAAATTGCAAGGAGAACCCCTGGATTCACTGGGGCTGATCTGCAGAATCTGATGAATGAAGCGGCTATTCTTGCAGCCAGGCGTGACCTCAAGGAAATAAGTAAAGATGAGATATCTGATGCGCTTGAAAGGATCATAGCTGGACCTGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAGCCAAGATATCAATTATTCCTCGTGGCCAAGCTGGTGGTCTCACATTTTTTGCTCCCAGCGAAGAGAGGCTCGAGTCTGGATTGTACAGTAGAAGTTACCTTGAAAATCAGATGGCTGTTGCCCTGGGTGGAAGGGTTGCCGAAGAGGTTATTTTTGGCCAGGAAAATGTCACCACCGGAGCATCAAACGACTTCATGCAAGTTTCACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCGGAAGTGAGGGAACTGGTAGAGAGAGCATATTCTAGGGCAACACATATTATCTCAACTCACATTGATATCCTTCACAAGCTTGCTCAACTTCTCATAGAAAAAGAAACTGTGGATGGTGAAGAGTTCATGAGTCTATTCATTGATGGAAAAGCCGAATTATATGTTGCATAA 2085 0.5156 MALGTSALIGRNVLVSPPTPKTTKSSTPLQFLFKRSILNAHNSQAALAALIFSSASLSVTPQALAADNVTPPPVIEAQQSQLNPSNSSSPFSQNLLLTAPKPQASSDLPEGTNWRYSEFLNAVKKGKVERVRFSKDGSALQLTAIDGRRASVIVPNDPDLIDILAMNGVDISVAEGESPNSLFNIIGNLLFPLLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRNKSKFQEVPETGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKGKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVERAYSRATHIISTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00178 694 Pfam Peptidase family M41 490 683 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma04g00178 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 480 IPR027417 -
Gma04g00178 694 Gene3D - 109 183 - -
Gma04g00178 694 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 40 686 - -
Gma04g00178 694 Gene3D Peptidase M41 486 689 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma04g00178 694 CDD AAA 243 408 - -
Gma04g00178 694 SUPERFAMILY FtsH protease domain-like 490 684 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma04g00178 694 SMART AAA_5 272 411 IPR003593 -
Gma04g00178 694 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 11 694 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gma04g00178 694 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 182 683 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gma04g00178 694 ProSitePatterns AAA-protein family signature. 379 397 IPR003960 GO:0005524|GO:0016887
Gma04g00178 694 PANTHER METALLOPROTEASE M41 FTSH 40 686 - -
Gma04g00178 694 Gene3D - 227 409 IPR027417 -
Gma04g00178 694 Gene3D - 410 485 - -
Gma04g00178 694 Pfam AAA+ lid domain 431 474 IPR041569 -
Gma04g00178 694 Pfam ATPase family associated with various cellular activities (AAA) 277 408 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00178 Gma-Chr4 1528153 1531984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00178 232 685 Miscellaneous Gene Families AT5G53170 49.561 1.15e-135 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00178 K03798 - gmx:100803824 1269.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00178 04 1528153 1531984 Gma04g00178 04 1528153 1531984 ECH
Gma04g00178 04 1528153 1531984 Gma06g00169 06 1494661 1498747 GST
Gma14g02186 14 53011023 53013397 Gma04g00178 04 1528153 1531984 PCT