Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00154 ATGAAAATCCTCATGAAAGCTAAGGTCTTGGCGGTATCTTGCAACATCACAACAAGTCTCAAAGCTGAGTTGCTGGCAATTTATCATGGGCTTCACAAGGTTTGGGATGATGGATTCAGAATGTGCGTCTTTGATTCTCACTACACAAAAAATGGGCTTATTAGAGCTGGACCGGGCCCAACATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGAAAGGGGAAGGCAGCGAAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGGCGGAAGTGGCGAGGAGGAGGATGACGATTAGAGAATGGACTGATGATAATAGCATTTATGCATGGCTAACAAATGACCGTTTTAATCGTCAGAGAGGTCTTTTCGCTTATGATCCCGTAGCATAA 663 0.4585 MKILMKAKVLAVSCNITTSLKAELLAIYHGLHKVWDDGFRMCVFDSHYTKNGLIRAGPGPTSIMKGGKSKTESKRADAKLAVNKKGAATKTRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEVARRRMTIREWTDDNSIYAWLTNDRFNRQRGLFAYDPVA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00154 220 SMART hmgende2 106 177 IPR009071 -
Gma04g00154 220 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 107 176 IPR009071 -
Gma04g00154 220 Pfam HMG (high mobility group) box 107 176 IPR009071 -
Gma04g00154 220 Gene3D High mobility group box domain 90 187 IPR036910 -
Gma04g00154 220 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 64 184 - -
Gma04g00154 220 MobiDBLite consensus disorder prediction 59 110 - -
Gma04g00154 220 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 64 184 IPR031061 -
Gma04g00154 220 SUPERFAMILY HMG-box 94 185 IPR036910 -
Gma04g00154 220 Coils Coil 158 185 - -
Gma04g00154 220 CDD HMGB-UBF_HMG-box 107 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00154 Gma-Chr4 1298467 1303479 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gma04g00154 HMG_box 1.1e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00154 K25507 - gmx:100500173 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00154 04 1298467 1303479 Gma04g00154 04 1298467 1303479 ECH