Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00136 ATGTTGGCAATGGAAGAGCTACTGTGTGAACTTAGTGATCATGAAAAGAGAAACGAGCAAGGTCTGCCCCCGGGTTTCAGGTTTCACCCCACTGATGAAGAACTTATAACCTTTTACTTGGCTTCTAAGGTCTTTAATGACACTTTCTCTAACCTCAAGTTTGCTGAGGTTGACCTCAATAGATGCGAGCCTTGGGAACTTCCAGCAGATGTGGCAAAGATGGGGGAGAGAGAATGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGAGCTGGGTACTGGAAAGCCACTGGGAAGGACAAGGAAGTGTACAGTGCATCCAGTGGAACCCTACTTGGAATGAAGAAGACCCTTGTTTTCTACAAAGGCAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCACGAGTACCGTTTGGACGCTCACTTTTCCCTTCCCCATACTTACCCCTCTAAGGAGGAGTGGGTGATATGCAGGATATTTCATAAATCTGGGGAAAAGAGAACTCCAGTGCTCCAAGTCCAAGGACATTCAGATGCTTCTTCGTCCCCAATAAAAAGTTCTTTACCTCCATTACTTGCAAGCTCATCTCATTCTCAGCTGCGAGACTTCCAAAGCCCGGTTCTGATTCACCAACAAGACCAAAATGGCCTCTCTCACCCTCATCTTTTCCCATTGGAAATCTCCAACGCCAGAAACCACCCATCGGACCTACTCTTCAAGCCCCTCCAGCAAAATTGCACCCTGAAGACCAAGGAACAAACTATTATTCCAAAAGTGATCAAAACGGAGGACGCTACATTCTATCATCAATTACTAGATGACCATAATAACATGCGCTGTGTGAACAAGTTGAATCAAAATCCAAGTAATTTCCTCAACACTTTCCCTCTTGAGGTGGACGCTGGCTTGATGGCATTCTCAGGAGCTGCAAATGCTCAAGCTAGGGAAATATCCACAGCTTCAACACCCTTTAATAGGGTAGCCTTGCAGCAGATGCTTGATTCTTGGCCTCTGACCTAG 1056 0.4631 MLAMEELLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNDTFSNLKFAEVDLNRCEPWELPADVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDAHFSLPHTYPSKEEWVICRIFHKSGEKRTPVLQVQGHSDASSSPIKSSLPPLLASSSHSQLRDFQSPVLIHQQDQNGLSHPHLFPLEISNARNHPSDLLFKPLQQNCTLKTKEQTIIPKVIKTEDATFYHQLLDDHNNMRCVNKLNQNPSNFLNTFPLEVDAGLMAFSGAANAQAREISTASTPFNRVALQQMLDSWPLT 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00136 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 12 303 - -
Gma04g00136 351 Gene3D NAC domain 31 178 IPR036093 GO:0003677|GO:0006355
Gma04g00136 351 MobiDBLite consensus disorder prediction 183 204 - -
Gma04g00136 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 303 - -
Gma04g00136 351 Pfam No apical meristem (NAM) protein 23 150 IPR003441 GO:0003677|GO:0006355
Gma04g00136 351 MobiDBLite consensus disorder prediction 185 204 - -
Gma04g00136 351 SUPERFAMILY NAC domain 17 174 IPR036093 GO:0003677|GO:0006355
Gma04g00136 351 ProSiteProfiles NAC domain profile. 22 174 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00136 Gma-Chr4 1160360 1162596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00136 1 180 NAC Transcription Factor Family AT1G76420 73.333 2.80e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma04g00136 NAM 4.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00136 - - gmx:100808967 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00136 04 1160360 1162596 Gma04g00136 04 1160360 1162596 ECH
Gma04g00136 04 1160360 1162596 Gma06g00129 06 1127705 1130003 GST