Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00116 ATGGCTTCTGAAGTAATAGAGTACCGATGCTTTGTCGGTGGGCTTGCTTGGGCCACCGACAGCGATGCTCTCGAGAAAGCCTTCTCTCATTATGGTGAGATCGTCGAATCGAAGGTTATCATCGATCGTGAAACTGGAAGATCGAGAGGGTTTGGATTTGTGACCTTCGCCTCGGAGCAGGCGATGAAAGACGCAATCGAAGGAATGAACGGTCAGAACCTCGACGGTCGTAGTATCACAGTGAACGAAGCACAATCCCGTGGAAGAGGCGGTGGTGGCGGTGGATACGGAGGTGGTGGTGGTTATGGCGGCGGCGGTTACAGCCGCGGTGGAGGAGGATATGGAGGAGGAGGCCGCCGTGAAGGTGGTGGAGGTGGCTATAACCGCAACggtggaggtggtggatatggtggtggtggaggttatggtggtggtggaggtcatggtggcggtggaggttatggtggcggtggGAGAGACCGTGGATATGGTGGTGACGGCGGGTCCCGCTACTCGAGAGGAGGCGGTGCTTCGGATGGAGGAAGCTGGAGGAATTAG 558 0.4803 MASEVIEYRCFVGGLAWATDSDALEKAFSHYGEIVESKVIIDRETGRSRGFGFVTFASEQAMKDAIEGMNGQNLDGRSITVNEAQSRGRGGGGGGYGGGGGYGGGGYSRGGGGYGGGGRREGGGGGYNRNGGGGGYGGGGGYGGGGGHGGGGGYGGGGRDRGYGGDGGSRYSRGGGASDGGSWRN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00116 185 PANTHER GEO13361P1-RELATED 1 118 - -
Gma04g00116 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Gma04g00116 185 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
Gma04g00116 185 MobiDBLite consensus disorder prediction 147 185 - -
Gma04g00116 185 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 118 - -
Gma04g00116 185 Gene3D - 3 118 IPR012677 -
Gma04g00116 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Gma04g00116 185 SMART rrm1_1 9 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00116 Gma-Chr4 973105 975160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00116 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.000 2.83e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00116 - K13195 gmx:100806292 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00116 04 973105 975160 Gma04g00116 04 973105 975160 ECH