Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00088 ATGCGGCCCTCCGATCTGTCGAAACCGTCGTACGTGGCGAGGATCGAGCGGATCGAAGCCGACGCGCGCGGCTCCAACGTGAAGATTCACGTCCGGTGGTACTACCGGCCGGAGGAGTCAATCGGCGGCCGCCGCCAGTTTCATGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGCGCCGACACAATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCTGTGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAATTGCTCTGCTGAAGGTCAAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGGTGGATACTAAACGCCGTCGTAGGTAA 561 0.5116 MRPSDLSKPSYVARIERIEADARGSNVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEAKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCTDWFHPACIDMTVEEAKRLDHFFCENCSAEGQKKLQNSHSASRHSDTKVDTKRRRR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00088 186 ProSiteProfiles Zinc finger PHD-type profile. 109 160 IPR019787 -
Gma04g00088 186 SUPERFAMILY FYVE/PHD zinc finger 100 163 IPR011011 -
Gma04g00088 186 Pfam BAH domain 4 106 IPR001025 GO:0003682
Gma04g00088 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 173 IPR013083 -
Gma04g00088 186 ProSiteProfiles BAH domain profile. 1 107 IPR001025 GO:0003682
Gma04g00088 186 SMART BAH_4 1 107 IPR001025 GO:0003682
Gma04g00088 186 Gene3D - 1 105 IPR043151 -
Gma04g00088 186 SMART PHD_3 111 158 IPR001965 -
Gma04g00088 186 ProSitePatterns Zinc finger PHD-type signature. 112 157 IPR019786 -
Gma04g00088 186 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 186 IPR045205 GO:0006325|GO:0035064
Gma04g00088 186 Pfam PHD-finger 111 159 IPR019787 -
Gma04g00088 186 PANTHER OS08G0421900 PROTEIN 1 186 - -
Gma04g00088 186 MobiDBLite consensus disorder prediction 165 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00088 Gma-Chr4 777229 780727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00088 1 109 Core DNA Replication Machinery Family AT4G14700 31.193 2.16e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma04g00088 BAH 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00088 - - gmx:100526926 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00088 04 777229 780727 Gma04g00088 04 777229 780727 ECH
Gma04g00088 04 777229 780727 Gma06g00083 06 751084 755087 GST