Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00085 ATGAAGATCCAGTGTGCTGTGTGTGACAAAGTGGAAGCCTCCGTCTTCTGCTCTGCAGATGAAGCTGCTCTTTGCCATAGTTGTGACCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCACGCTTCTCTCTCCATTACCCCACCTCCCAAGACTTCCCTCTTTGTGATATTTGCCAAGAGAGGCGTGCATATCTATTTTGCCAAGAAGACAGGGCATTGCTATGCAGGGAGTGTGACGTTCCTATCCACAGGGCGAATGAGCATACCCAGAAGCATAACAGGTTTCTTCTCACCGGAGTGAAGCTCTCTGGTACTTCTTTGGATCCTGCTGCGTCCTCCACCAATTGCACCCATGGCTCTGAAGGAAGAAACAACGCTCGATCTAGAATGAACAGACCCAGATCATCAGTTTCCAATGAAGAAAATGCAAGTAATTCTTCTTGCAAGGTTGAAGACAACGTGGCTAGTGACACTGGTTCGGTTTCAACTAGCAGCATTTCTGAGTACTTGATCGAAACAATACCCGGTTACTGTTTTGAAGACCTTCTTGATGCTTCATTTGCACCTAATGGTTTCTGTAAGAACCAGAACTATGATCGTCATAGGCGTTTCAGGACCAAGATCTTCAAGTTATTAGGACGTGTTTGGATTTTTCAAGCTGTTATGTTTGCATTGTCACCTTGGAGGATATTAAGAGAACGACTTCACATAAGCTTCAAACCCAAACAAGGGGTTGGTGCACGGGCCATTTTTCTTTGA 768 0.4583 MKIQCAVCDKVEASVFCSADEAALCHSCDRTIHHANKLATKHPRFSLHYPTSQDFPLCDICQERRAYLFCQEDRALLCRECDVPIHRANEHTQKHNRFLLTGVKLSGTSLDPAASSTNCTHGSEGRNNARSRMNRPRSSVSNEENASNSSCKVEDNVASDTGSVSTSSISEYLIETIPGYCFEDLLDASFAPNGFCKNQNYDRHRRFRTKIFKLLGRVWIFQAVMFALSPWRILRERLHISFKPKQGVGARAIFL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00085 255 SMART bboxneu5 53 100 IPR000315 GO:0008270
Gma04g00085 255 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gma04g00085 255 MobiDBLite consensus disorder prediction 111 163 - -
Gma04g00085 255 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gma04g00085 255 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 204 - -
Gma04g00085 255 CDD Bbox1_BBX-like 57 100 - -
Gma04g00085 255 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 204 - -
Gma04g00085 255 CDD Bbox1_BBX-like 5 47 - -
Gma04g00085 255 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Gma04g00085 255 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Gma04g00085 255 Gene3D Classic Zinc Finger 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00085 Gma-Chr4 751498 753238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00085 1 202 C2C2-CO-like Transcription Factor Family AT1G75540 50.926 1.13e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma04g00085 zf-B_box 3.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00085 - - gmx:100800981 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00085 04 751498 753238 Gma04g00085 04 751498 753238 ECH
Gma04g00085 04 751498 753238 Gma11g01013 11 8607770 8609771 ECH
Gma04g00085 04 751498 753238 Gma12g00330 12 2741777 2745309 ECH
Gma04g00085 04 751498 753238 Gma11g00680 11 5679949 5683681 ECH
Gma04g00085 04 751498 753238 Gma01g01720 01 52898828 52901897 ECH
Gma04g00085 04 751498 753238 Gma06g00080 06 721842 723021 GST
Gma17g02437 17 42361363 42363212 Gma04g00085 04 751498 753238 PCT
Gma14g02110 14 52235560 52237258 Gma04g00085 04 751498 753238 PCT
Gma04g00085 04 751498 753238 Gma17g02437 17 42361363 42363212 PCT
Gma04g00085 04 751498 753238 Gma14g02110 14 52235560 52237258 PCT