Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma04g00081 | ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGAGAGAGTTCATCGTTCAGCAAATGCTCTGCGAGGATATTTTCAGCCTGAACGCCAACACCGTCGCCGCCGGCGAAGATTTCTCCGTCGACGACCTATTTGACTTCTCTAACGGCTCTCTTCACAACGAACAACAACAAGAATACGACGAAGGGAAACAAAGTTTATCGGCTTCAGAGGACCGCGGAGAAGACGATTGCAACTCCAATTCCACCGGCGTTTCCTATGATTCACTTTTCTCCACCGAATTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAATGGGTTTCACACTTTGTGGACGATTCACTCCCGGAGCTGTCACTTCTATACCCGGTTCGTTCGGAGGAAGCAAACCGGTTTGTTGAACCGGAACCCTCAGCGAAGAAAACGCCTTGTTTTCCGTGGGAAATGAAAATAACGACCAAGGCGAGAACCGTACGGAATAGGAAGCCCAGCAACAGTCGCATGTGGTCGTTGGGTAGCCCGTTGCTCTCGCTGCCGTCTTCGCCGTCTTCGCCGTCGTCGTGTTCTTCTTCGGTGAGGGAGCCGCCGGCTAAGAAGCAGAAGAAGCAAGCCCAGGCCCAGCCCGTTGGGGCCCAGATTCAGCGGCGGTGCAGTCACTGCCATGTGCAGAAGACGCCGCAGTGGAGGACCGGCCCACTGGGCGCGAAGACCCTCTGCAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGTTATTTTCGGAGTATAGACCGGCGTGTAGCCCCACCTTCTGCAGCGATATTCACTCCAATAGTCACCGTAAAGTGTTAGAGATTCGGAAGAGGAAAGAGGTGGCTCAACCGGATACCGGCTTGGCCCAGGCCCAGACTCAAATGGTTCCCACCTGCTGA | 918 | 0.549 | MEVAVAKALKPSLRREFIVQQMLCEDIFSLNANTVAAGEDFSVDDLFDFSNGSLHNEQQQEYDEGKQSLSASEDRGEDDCNSNSTGVSYDSLFSTELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEANRFVEPEPSAKKTPCFPWEMKITTKARTVRNRKPSNSRMWSLGSPLLSLPSSPSSPSSCSSSVREPPAKKQKKQAQAQPVGAQIQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKRKEVAQPDTGLAQAQTQMVPTC | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma04g00081 | 305 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 214 | 275 | - | - | |
Gma04g00081 | 305 | MobiDBLite | consensus disorder prediction | 55 | 85 | - | - | |
Gma04g00081 | 305 | MobiDBLite | consensus disorder prediction | 59 | 80 | - | - | |
Gma04g00081 | 305 | ProSitePatterns | GATA-type zinc finger domain. | 220 | 245 | IPR000679 | GO:0006355|GO:0043565 | |
Gma04g00081 | 305 | MobiDBLite | consensus disorder prediction | 165 | 197 | - | - | |
Gma04g00081 | 305 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 305 | - | - | |
Gma04g00081 | 305 | SMART | GATA_3 | 214 | 268 | IPR000679 | GO:0006355|GO:0043565 | |
Gma04g00081 | 305 | Pfam | GATA zinc finger | 220 | 253 | IPR000679 | GO:0006355|GO:0043565 | |
Gma04g00081 | 305 | Gene3D | - | 213 | 264 | IPR013088 | GO:0006355|GO:0008270 | |
Gma04g00081 | 305 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 305 | - | - | |
Gma04g00081 | 305 | ProSiteProfiles | GATA-type zinc finger domain profile. | 214 | 250 | IPR000679 | GO:0006355|GO:0043565 | |
Gma04g00081 | 305 | MobiDBLite | consensus disorder prediction | 159 | 213 | - | - | |
Gma04g00081 | 305 | CDD | ZnF_GATA | 219 | 276 | IPR000679 | GO:0006355|GO:0043565 | |
Gma04g00081 | 305 | PIRSF | Txn_fac_GATA_plant | 18 | 304 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma04g00081 | Gma-Chr4 | 702764 | 704064 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma04g00081 | 40 | 290 | C2C2-Gata Transcription Factor Family | AT4G36240 | 45.247 | 1.07e-54 | 176 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Gma04g00081 | GATA | 4e-16 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma04g00081 | - | - | gmx:100808242 | 577.4 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma04g00081 | 04 | 702764 | 704064 | Gma04g00081 | 04 | 702764 | 704064 | ECH | |
Gma04g00081 | 04 | 702764 | 704064 | Gma06g00076 | 06 | 679816 | 681393 | ECH | |
Gma04g00081 | 04 | 702764 | 704064 | Gma06g00076 | 06 | 679816 | 681393 | GST |