Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00077 ATGGACGTCCAAGACAAGGAAGCTCCACTCCAACAACACTCCGATTCGCAATGCCACACCGACCTGCCAAATCTCCCCTACGCCGCCGCCGGACACCTTGAAGAGGCCGTGGCGGTGTCCGACGAGGGCGCCGAAACGCTAGTGACTGACGTAGCGGGTGACGAGATGATTGAGGAGAAGGGGAGTGAAGGAATTGATGTGGATGACGTGGCTTTGGAGACGGTGAAGGTGGAAGAGGAACCGAATTTGGCAATTGATGCGGAAGACGACGAAATTGGGGACGGAAACACAAACGAAGACGCTTTGATGGAAGAAGAGCAACATcaacaaggagaggaggaggaggaggaagagcagcaacaaggagagggggaggaagaagaagaacaacaagtagacgaggaggaagaaggagaacagcaacaagtagatgaggaggaagaaggaggacagcaacaaggagacgaggaggaagaaggaggacagcaacaaggagacgaggaagaagaagaagagcgacaaggagaagaagaagaTGGTGATGGTGGAATGGCAATGGCAGAAGACACAGAGGAGAAGAGTGCTGCTGTGAGTGGTGGGAAGAGGAGGCGTGGGGCTGGGAAGAATGCTAAGGCTACAGGGAGAGTTGCATCCAGGAAAAAGATGGAGGAGGACGTTTGTTTCATTTGCTTCGATGGGGGTGACCTTGTGCTTTGTGACCGCAGGGGATGCCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGACGAGGCCTTCTTTCGAGCTAAGGGGAAGTGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCATCCTATATGTGCTATACATGTACATTTTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTACGTGTTAGGGGAAACAAGGGCTTTTGTGAGACTTGCATGAGAACCATAATGTTAATTGAACAGAATGAACAGGGAAACAATGTGGGACAAATAGATTTTGATGACAGAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATATAAAAAAAAAACTATCTCTCACATTTGATGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCTTTCTAAAGAGGAATCACTGGATGAAACTTTTGATGCCACTAACGATAGAGGATCAGATTCAGATAGCTCCTATGAGAATGCAGATTTGAGTCGTTCTAAAAGAAAAAAGGCCAAGAAACGGGGGAAGTCCCGTTCCAAAGAAGGAGATGACAGCTCAGAGTGGGCTTCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGACAAATCTGTTTTATCTCAGTTCGATGTGCATACTCTTTTGCTAGAGTATATCAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATTTGTGATGCAAGACTTCAAAATCTGTTTGGAAAACCAAAAGTGGGACATTTTGAAACGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGATGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACTGAAATGAGTCATTGGGAAGGTGATGGCAATCCCAATTCATATACGAAAGCTGGCAAAGATAAGAGACGAAAGAACCGTAAAAAGGGTGATGAGAGAGGACTTCAAACTAATGTTGATGATTATGCAGCCATTGATAACCATAATATTAATTTAATTTATCTAAGACGTAACTTGGTGGAAGATCTACTTGAAGATACTGAGAAGTTCCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAACAGGATTTGTATAGGTTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTTTCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAAAGCATAAAGTGTGGCCTCATAAATCGGCTAACTGTGGGTGACATTCAGGACAAAGCATTGGTGCTTCAGGAAGCTAGAGTAAAAGATTGGCTAGAAACAGAGACAGTGCGGCTGAGTCATCTTCGTGATAGAGCTAAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGCAGGTTGGAGGAAATCCCAGAAATACACGTAGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGACGAAAATGAAGTGGATGATAAAAGACAAGAAAACTACATGAGACCTAGAGGGTCTACTGCATTTGGAAGGAGGGGGAGAGATATTGTTTCTCCTAGAAGTGGTTCTATTTCAAATGATTCTTGGAGTGGAACAAGGAATTATTCTAATGTGAATCAGGAACTAAGCAGAAATTTGTCTAATAAGGGATTTTCAATCAAAGGTGATAATGCTTCCAATGCTAATGAGGCACTAAATGATGCTCAATTGCACCGGGGAAGAGATCGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAGCAATCTTCAACCTTGGAAAGTGGTGCTAAAAATACCCAACCATTGGTAGCATCTGAGTCTTTCTCTGCTGCTGTATCAGAAGCTTCTGCAGCACCATCTTCAGCCGGAATAACTCCTCCAGCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTACCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATCGTGCAACTACGCAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCTTAACAGATGCCTTGACAGGGAATTTTTCTAAGGAACCATCAATGGTGGATAAAGCTCAATCGGTGCATGATTTACATTACCCATCATCATACTCTAGGAAGTCTCCACAACAAGGTATAGAAGGTCAAGTTGGAGAAAGACTGTCATTAGATCAAAATGGTGGATCTTGGAATTCACATAGTACTCTGGGTTCTCCGGGACAAACCACAGGAGGAAGTTGGAGATCTAAAGATAATATGAACTCTTTAGCTAATAGAACTTCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAATGGCTGGGGTTCTGATGCTGGTGTTAGGAATGATGCAACAAATCTTCCTTCACCTACTCCCCAGACTACTCCTGGTGGTACTATGGGGCTGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCTTAGGAAATTCATTCCCAGGCAGTCACGGAGGTTTGCAGGCCTCTGTGGCAGTGCACCCAGAGCATGCTGTACAAAATGCTGAAAAAGGCTCAAGTTCACAACCTGGCATTAGTTCAGCTTCTACAGATAATACCAAGTTGCATCCTCAAGCAACAGCGGTGGTACCTGTTGTGGCTTCAGGGGTTGACATCAAAATGGCAGGTGCAAATATGCAAAACCAGGTTGTGAGTAGCCAGAACTCTCATGCTGAAGCTCAAGGGTGGGGTTCTGCTGGGGTTCCAAAGCCAGAACCACTGGCCTGGGGAGGTGCATCTTCTCAAAGGATAGAACCAAATAATCCTGCTACCATGCCTTCCCAGCCAGCTTCCCATGGCCCCTGGGGTGATGCTTCATCTGTGCCAACCACTGTCTCGTTTAACACTGGAAATCCAACTGCGAGTTTACCCACACCTGGATTTCTGGGCATGACTGCACCTGAGCCTTGGAGACCACCGGCTTCAAGTAGTCAGTCAAACATCGCAGCTCCAGCTCCACCCAATATGCCTTGGGGCATGGGCATGTCTGGAAATCAGAATATGAACTGGGGTGGGGTTGTACCTGCCAACATGAATGTAAACTGGATGCCTACGCAGGTGCCAGCACCTGGAAATTCAAATCCAGGATGGGCTGCTCCTAGTCAGGGGCTACCTCCAGTGAATGCAGGTGGCTGGGTTGGACCTGGTCAAGGACGTTCCCATGTAAATGCAAATGCAGGTTGGGTTGGGCCTGGTCAGGGGCTAGCACCTGGAAATGCCAATCCTGGTTGGACTGCACCGGTTGGGAATCCAGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCCAACCATGGGGATCGTGGTGCACAGGGTAGAGATTCTGGTTACGGTGGTAAATCTTGGAATAGGCAGTCATCATTTGGCAGAGGAGGTTCTTCCAGGCCTCCTTTTGGGGGACAAAGAGTAGTCTGCAAGTATTATGAGAGTGGACGTTGCAGGAAGGGGACTTCTTGTGACTTTCTACACACTTAG 4362 0.4303 MDVQDKEAPLQQHSDSQCHTDLPNLPYAAAGHLEEAVAVSDEGAETLVTDVAGDEMIEEKGSEGIDVDDVALETVKVEEEPNLAIDAEDDEIGDGNTNEDALMEEEQHQQGEEEEEEEQQQGEGEEEEEQQVDEEEEGEQQQVDEEEEGGQQQGDEEEEGGQQQGDEEEEEERQGEEEDGDGGMAMAEDTEEKSAAVSGGKRRRGAGKNAKATGRVASRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNASYMCYTCTFSLCKGCIKDAVILRVRGNKGFCETCMRTIMLIEQNEQGNNVGQIDFDDRNSWEYLFKDYYIDIKKKLSLTFDELTQAKNPWKGSDMLLSKEESLDETFDATNDRGSDSDSSYENADLSRSKRKKAKKRGKSRSKEGDDSSEWASKELLEFVMHMRNGDKSVLSQFDVHTLLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPKVGHFETLKLLESHFLLKDDSQAEDLQGSVVDTEMSHWEGDGNPNSYTKAGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQEARVKDWLETETVRLSHLRDRAKCVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDENEVDDKRQENYMRPRGSTAFGRRGRDIVSPRSGSISNDSWSGTRNYSNVNQELSRNLSNKGFSIKGDNASNANEALNDAQLHRGRDRESQLSNSWERQKQSSTLESGAKNTQPLVASESFSAAVSEASAAPSSAGITPPAVKINETEKMWHYQDPSGKVQGPFSIVQLRKWSNTGYFPADLRIWRTTEKQDDSILLTDALTGNFSKEPSMVDKAQSVHDLHYPSSYSRKSPQQGIEGQVGERLSLDQNGGSWNSHSTLGSPGQTTGGSWRSKDNMNSLANRTSPLAVEVPKNPANGWGSDAGVRNDATNLPSPTPQTTPGGTMGLAFENKWSPTPVQLPGSLLGNSFPGSHGGLQASVAVHPEHAVQNAEKGSSSQPGISSASTDNTKLHPQATAVVPVVASGVDIKMAGANMQNQVVSSQNSHAEAQGWGSAGVPKPEPLAWGGASSQRIEPNNPATMPSQPASHGPWGDASSVPTTVSFNTGNPTASLPTPGFLGMTAPEPWRPPASSSQSNIAAPAPPNMPWGMGMSGNQNMNWGGVVPANMNVNWMPTQVPAPGNSNPGWAAPSQGLPPVNAGGWVGPGQGRSHVNANAGWVGPGQGLAPGNANPGWTAPVGNPGMWGSEQSHNGDRFPNHGDRGAQGRDSGYGGKSWNRQSSFGRGGSSRPPFGGQRVVCKYYESGRCRKGTSCDFLHT 1453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00077 1453 ProSitePatterns Zinc finger PHD-type signature. 227 287 IPR019786 -
Gma04g00077 1453 Gene3D - 569 698 IPR036128 GO:0003677
Gma04g00077 1453 ProSiteProfiles Plus3 domain profile. 567 700 IPR004343 GO:0003677
Gma04g00077 1453 ProSiteProfiles Zinc finger PHD-type profile. 224 290 IPR019787 -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 1003 1042 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 1127 1149 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 836 870 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 83 185 - -
Gma04g00077 1453 Pfam Plus-3 domain 572 675 IPR004343 GO:0003677
Gma04g00077 1453 ProSiteProfiles GYF domain profile. 906 960 IPR003169 GO:0005515
Gma04g00077 1453 MobiDBLite consensus disorder prediction 1407 1421 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 789 805 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 1207 1236 - -
Gma04g00077 1453 SMART swib_2 440 511 IPR019835 -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 735 805 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 387 427 - -
Gma04g00077 1453 SMART PHD_3 226 272 IPR001965 -
Gma04g00077 1453 CDD Bbox1 272 298 - -
Gma04g00077 1453 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 67 1453 - -
Gma04g00077 1453 SUPERFAMILY SWIB/MDM2 domain 430 507 IPR036885 -
Gma04g00077 1453 SUPERFAMILY CCCH zinc finger 1430 1452 IPR036855 GO:0046872
Gma04g00077 1453 MobiDBLite consensus disorder prediction 76 215 - -
Gma04g00077 1453 Pfam SWIB/MDM2 domain 433 506 IPR003121 -
Gma04g00077 1453 SMART gyf_5 907 962 IPR003169 GO:0005515
Gma04g00077 1453 MobiDBLite consensus disorder prediction 525 558 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 853 870 - -
Gma04g00077 1453 Coils Coil 103 128 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 1003 1081 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 1176 1236 - -
Gma04g00077 1453 CDD PHD5_NSD 226 271 - -
Gma04g00077 1453 Gene3D - 907 966 IPR035445 -
Gma04g00077 1453 ProSiteProfiles SWIB/MDM2 domain profile. 425 508 IPR003121 -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 838 852 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 1380 1429 - -
Gma04g00077 1453 Gene3D SWIB/MDM2 domain 418 516 IPR036885 -
Gma04g00077 1453 SMART rtf1 567 677 IPR004343 GO:0003677
Gma04g00077 1453 PANTHER UNCHARACTERIZED 67 1453 - -
Gma04g00077 1453 CDD SWIB-MDM2_like 431 506 - -
Gma04g00077 1453 Pfam GYF domain 909 949 IPR003169 GO:0005515
Gma04g00077 1453 MobiDBLite consensus disorder prediction 1064 1081 - -
Gma04g00077 1453 SUPERFAMILY FYVE/PHD zinc finger 223 278 IPR011011 -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 735 751 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 1124 1149 - -
Gma04g00077 1453 MobiDBLite consensus disorder prediction 1 24 - -
Gma04g00077 1453 ProSiteProfiles Zinc finger C3H1-type profile. 1428 1453 IPR000571 GO:0046872
Gma04g00077 1453 SUPERFAMILY GYF domain 898 959 IPR035445 -
Gma04g00077 1453 CDD GYF 906 961 IPR003169 GO:0005515
Gma04g00077 1453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 317 IPR013083 -
Gma04g00077 1453 SUPERFAMILY Plus3-like 568 698 IPR036128 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00077 Gma-Chr4 665289 676398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00077 224 311 PHD Transcription Factor Family AT5G36670 31.000 1.23e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma04g00077 Plus-3 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00077 - - gmx:121174757 2525.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00077 04 665289 676398 Gma06g00070 06 643623 655444 GST