Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00062 ATGACAGGTCAAGAAAACATGAAAGGTCCTTTCACCAAGTCTGGTGCATTAGCAAGCTTTGGTCAAGAGGATTTATTTGCAAGGGTGACCCTTCAAAACTACTATCAATATCGGCATGTAGACAAACCTGGGTGGAAACTAGGATGGACGTGGGCTAACAATGAAGTGATATGGTCAATGAGTGGTGCCATAGCAACTGATAGAGGGAATTGTTCATCTTACAGCGGCTCTCAGATGCCACATTCATGCAAGAAAGATCCCACCATAGTTGATCTCTCTCTAGATGCCTCACAAAACAGGTCAGAGCATTGTTGCCGTGGTGGCCTCCTCTCTCCCTGGTCTATTGATCCTTTCTATGCATTCTCTTCATTTGAACTTGAAGTGCGCAACGTGGGAGATAACCCACTTGGACAAGCACCTATTAATCTTACATTGATGGCCCCAGGTCCTGGTTACACTTGTAGCCCCCTTCTTGACACTGATCTCTCAGTGTCCTCAGATTTTGGGGGACTAAGACAAGTTCCTGTTCTCAGAACTTGGAAGTCAACATGTGCATACTCCAGTTTCTTAGCAAACACAATACCGGTATGCTGTGTTTCCCTCTCATCATTTTACAACCCCGCCATCACATCTTGCCGTAATTGCAGTTGTGGATGCAGAGAAGCAGATAAAAGTACAGCAACTTGCATAAGGTCTAGTTCCTTGTCACGGTCTAATGAGGACAACACAATTGATGAAATGATTGAATGCACCGACCACATGTGCCCAGTTCGAGTCCATTGGCATTTCAAGAACAATTATATGAACCAATGGAGGGTGAAGCTTACAATTTCTAACTACAACTACAACAGAAACTACTCAAACTGGAACGTACTCGTTCAACATCCTGGTTTCACCCAAAAAGCGAGAACTTACAGCTTCAACAGCACTAAACTTCCCACCCTTGGGCTCCAAGATTATTACAACAATGAGCTAGTGCATTCTGATAAGGATGGAGTGGGTCTTGTGACTACAGAAATACTATTGGATAAAGATCCAAATTCTTTCACAGGGGTTCCTTTGGTCCGTTATCATGGGACATTCAAAGATCTCAATATGAACTGGATTTGGGCTGGGAATGATCCAACTTTGGGGGTTGATAGTATAGGCACGATACCATCTGCTCTTGCAACATATGCTGCTGTTCTAGCATTACAACCATACTTGATCATCAATGCAGGCACCGCTGGTGGCTTCAAGATTTTTGATCTGTATGGAATTGGTTTACGTAAAGTCTTTGAAACACCCAACCTTGTAAAGGAGCTTAATCTAAAGGAGTTCATTGTCTTTGTGCAAAACTTGAATGTTAAACAATATTTATGCATATTTCTGGTGGCTAAATTGTCTACTGGTGGCTCTTTAGATATGACAGAGCAGGATGAATCATCAATAATTGCAAATGATGCCACAGTTATAGATATGGAGGGAGCTGCTATTGCATATGTTGCCGACATACTAAAAGTTCCTGCAATTTTTATAAAAGCTGTGAATAGTATCGTTGATGGTGACAAAGCAATTGTAGAAGAATTCCTGCAGAATTTGGAAGCTCTAACTGCTGTTCTTGATCTGAACAAGTTATTAATTTTATTAATGGAAAGTGCATATCTGAACTTTGACAACTCAATTTCACCTTATCCTCTAGTAGAAGAATATATTTCTACAGGGAGAACTGCGAATGCCTTTACCTGA 1728 0.4144 MTGQENMKGPFTKSGALASFGQEDLFARVTLQNYYQYRHVDKPGWKLGWTWANNEVIWSMSGAIATDRGNCSSYSGSQMPHSCKKDPTIVDLSLDASQNRSEHCCRGGLLSPWSIDPFYAFSSFELEVRNVGDNPLGQAPINLTLMAPGPGYTCSPLLDTDLSVSSDFGGLRQVPVLRTWKSTCAYSSFLANTIPVCCVSLSSFYNPAITSCRNCSCGCREADKSTATCIRSSSLSRSNEDNTIDEMIECTDHMCPVRVHWHFKNNYMNQWRVKLTISNYNYNRNYSNWNVLVQHPGFTQKARTYSFNSTKLPTLGLQDYYNNELVHSDKDGVGLVTTEILLDKDPNSFTGVPLVRYHGTFKDLNMNWIWAGNDPTLGVDSIGTIPSALATYAAVLALQPYLIINAGTAGGFKIFDLYGIGLRKVFETPNLVKELNLKEFIVFVQNLNVKQYLCIFLVAKLSTGGSLDMTEQDESSIIANDATVIDMEGAAIAYVADILKVPAIFIKAVNSIVDGDKAIVEEFLQNLEALTAVLDLNKLLILLMESAYLNFDNSISPYPLVEEYISTGRTANAFT 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00062 575 Pfam COBRA-like protein 27 187 IPR006918 GO:0010215|GO:0031225
Gma04g00062 575 Gene3D Nucleoside phosphorylase domain 338 413 IPR035994 GO:0003824|GO:0009116
Gma04g00062 575 Gene3D Nucleoside phosphorylase domain 414 543 IPR035994 GO:0003824|GO:0009116
Gma04g00062 575 SUPERFAMILY Purine and uridine phosphorylases 355 527 IPR035994 GO:0003824|GO:0009116
Gma04g00062 575 PANTHER PROTEIN COBRA 22 350 IPR006918 GO:0010215|GO:0031225
Gma04g00062 575 PANTHER COBRA-LIKE PROTEIN 22 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00062 Gma-Chr4 488212 496594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00062 9 350 COBRA Gene Family AT3G29810 44.538 2.53e-98 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00062 - - vra:106760500 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00062 04 488212 496594 Gma04g00062 04 488212 496594 ECH
Gma04g00062 04 488212 496594 Gma06g00054 06 469198 477982 GST