Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00050 ATGAGTGAGAGTGAGAAGCAGAGGGTAACGGGGAAGGTGAAGTGGTTCGATGACCAGAAGGGTTTTGGCTTCATAACCACCGACGACAGCGGCGAGGAATTCTTCGTCCACCAGTCCTCCATCCGATCCGACGGCTTCCGCAGCCTCGCCCTCGGCGAGTCCGTCGAGTTCCTTATTGACTCCGATCCCGAAGGCCGCACCAAGGCCGTCGACGTCACCGGCCCTGACGAATCGCCAGTCCAGGGCACCCGCGGTGGCggaggaggaggaagaggaagctatggtggaggtggcggaagaggtggctatggtggTGGCGGACGCGGCGGAAGAGGTGGATATGGAGGAGGCggcggaggctatgggggaggtggctatggcggaggcggtggttatggtggaggtggcggcggcggCGGAGGGGGATGCTATAAGTGTGGCGAGACTGGTCACATAGCTAGGGACTGCAGCCAAGGTGGGGGTGGCGGTGGAAGGTACGGCGGTGGTGGGGGTgGCGGCGGAagctgctacaactgtggggagtccgggcattttgccagggactgcccttccagtgctCGTTGA 585 0.4376 MSESEKQRVTGKVKWFDDQKGFGFITTDDSGEEFFVHQSSIRSDGFRSLALGESVEFLIDSDPEGRTKAVDVTGPDESPVQGTRGGGGGGRGSYGGGGGRGGYGGGGRGGRGGYGGGGGGYGGGGYGGGGGYGGGGGGGGGGCYKCGETGHIARDCSQGGGGGGRYGGGGGGGGSCYNCGESGHFARDCPSSAR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00050 194 MobiDBLite consensus disorder prediction 65 99 - -
Gma04g00050 194 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Gma04g00050 194 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Gma04g00050 194 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 192 - -
Gma04g00050 194 SMART csp_8 10 75 IPR011129 GO:0003676
Gma04g00050 194 Gene3D - 171 194 - -
Gma04g00050 194 Gene3D - 139 165 - -
Gma04g00050 194 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Gma04g00050 194 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Gma04g00050 194 Pfam Zinc knuckle 175 191 IPR001878 GO:0003676|GO:0008270
Gma04g00050 194 Pfam Zinc knuckle 142 158 IPR001878 GO:0003676|GO:0008270
Gma04g00050 194 ProSiteProfiles Zinc finger CCHC-type profile. 176 191 IPR001878 GO:0003676|GO:0008270
Gma04g00050 194 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Gma04g00050 194 SMART c2hcfinal6 175 191 IPR001878 GO:0003676|GO:0008270
Gma04g00050 194 ProSiteProfiles Zinc finger CCHC-type profile. 143 158 IPR001878 GO:0003676|GO:0008270
Gma04g00050 194 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Gma04g00050 194 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Gma04g00050 194 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Gma04g00050 194 SUPERFAMILY Retrovirus zinc finger-like domains 134 192 IPR036875 GO:0003676|GO:0008270
Gma04g00050 194 Gene3D - 1 85 IPR012340 -
Gma04g00050 194 PANTHER COLD SHOCK PROTEIN 1 1 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00050 Gma-Chr4 430866 431450 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gma04g00050 CSD 1e-22 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00050 - - gmx:100820359 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00050 04 430866 431450 Gma04g00050 04 430866 431450 ECH