Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00048 ATGGACCGTGACGACGACCCTTCTGCACTTGCATGGCTTTGGGTCATTGAAGCCCTGTTAACTTCCAAAGAAATCACCACTCCCACTTTGCAGGGTTTCATTGATGCGGCACCTGTGGGACATCATAGATTTAGTAAAAATACAAAGGAATTGGTAGCCTTGAGGTGTTTGGAGAAACTGTCCACTCTTGTTGTTGACCCTGAAGCTTCTTCTAACTTGGATTCCAGATTTGGATTCAATGTTTTGGGGAGTTGTCAAGATGTCCTCAAAGAAATATTGGGCAAGATCCCTTTATCAAATCTGAAAGTGGCTGGAGCAGAGCTATTGAAATGGGATATTTGCCCATTTATTAAGCACAAAAGAGCTGTCACTTTTAAATGTCACTTAGAGCAGCTGAGAGAATCGATCTTCAAAAATACTCATCCAGATACTGATTACTTGAAAGAAACAACTAGATTATTTCCTCAGAATAGCAGTAGGGTTTGCTCTAAGAGGAGTAGGGTTTGCTCGGCTGATGAAACAGATTTGCCCTCTAAGAGGAGTTGGGCTTGCTCAGCTGATGAAACAGATCATGCTAGGAATGGTTATGGGGTAGAAATATCAGGTGATATTGTGTCCCAAGGTGAAAAGATTAACCTTGAAACGAAAAAGCAGGCAGAGCAAAATCTTTCTTTGAAGTGTAATGAAGAGGATCGATTACTGATATGTGATGCAAATGTTGTCCAACCAGTGGTTCCTGAATATGTTATGACAACCACCATTATACCCCATCATACCTCTGTAGCTGAGCCTTGCAATAATACATCTATGGATGAAACTGACAATACTGCACATCATGCCATTCCAACAAATGATGCTAATGCAGAAAATAATCAGCATATTATTAATTTTCACCAACCCAAACAGACAGAACCAGATATTACATCTTTAAATCTCTCTCAGAAGCCAGTTGCTAGTGATAAAACTGTATTTGATATGGTTAATGGCTGCAGAGCTGAGTTGTCTAGTGATAGTGATGGATATCACAATGGAAAAAATGATCTTGAAGCAAAAAAACATGAATTCCTGTGCTCCCCCTgcacggttgatcaagatttctcagcaatgactgaatcaattgaacaaaatcttcgcacggttgatcaagttttctcatcaatgactgaatcaattgaacaaaatcttTGCATGAAGTGTCATGAAGGTGGCCAATTATTGGCTTGTAAAACAACTACTTGCCCTTTGATGGTGCATAAAAACTGTCTAGGTGCATCTGCTCAATTGGATGCAAAGGGCAACTTTTTTTGCCCATTTTGTGCATATTCTCATGCTATTTCAGAATATCTTGAATCTAAGGAAAATGCTTCCTTGGCAAGGAAAGAATTAGCTATCTTTATCAGTAAAGGAAAACTGATTCAAGCTGCAGAATTTGTTCATGAATTTCATAGACAAGAACATTGTTTTTCAAGAAAGAACAGTAAGTGTGAACACATTCATGTTAAAAACAATGAAGATGATCAGTTAGCAGGGTGTGAAGACAATAGAGAAGATCATGTTGGTGAGCATGCAAATGAAGCCAATGATCTTCAATTTGAAAGAAGTAAGCAACAAGCAGAAGTTTTAAGAGAAGAGGAAATAGGTAAAATGCCAACTGTTGGAAGAGTTGAAGAAAGCGAAGTGCCAACTGACCATGTAGATGGACATGTTGGTGATAAATTTGCTAGTGAAAAAACAAATATTGCTCCTGAAAGCAATGCTGAAGAAGTTCCACAAGAAATGACAAAACAGCACAATATTGATGGAACAATAGAGCCAGTTTGTGCACAAGATACTGGGAAAGAGAAAATTTCTGAAGATGAAAGTGAAAAGCATAGTAATCCTCTATACTCATTGAGATTCCGTAAACATGAAACACAATGTAAACCCCAAGCAGGCCAAGTATTTCTGGGTAATCAGTTAAGGCGAAAGAAAATTCCGTGGACAGCTGAGGAGGAAGAGAAGATAAAGGAAGGAGTGCAGAAGTTTGGCAAGGAATGGAAAAAAATTTTGCAATTTGGTTCTCATGTGTTTGATAAGGTTGGTAAGCGTCGGACACCACATGACCTGAAGGATAAATGGAGGAACATGTGCAAAGCTCACTCAAAATCAAAATGA 2154 0.3691 MDRDDDPSALAWLWVIEALLTSKEITTPTLQGFIDAAPVGHHRFSKNTKELVALRCLEKLSTLVVDPEASSNLDSRFGFNVLGSCQDVLKEILGKIPLSNLKVAGAELLKWDICPFIKHKRAVTFKCHLEQLRESIFKNTHPDTDYLKETTRLFPQNSSRVCSKRSRVCSADETDLPSKRSWACSADETDHARNGYGVEISGDIVSQGEKINLETKKQAEQNLSLKCNEEDRLLICDANVVQPVVPEYVMTTTIIPHHTSVAEPCNNTSMDETDNTAHHAIPTNDANAENNQHIINFHQPKQTEPDITSLNLSQKPVASDKTVFDMVNGCRAELSSDSDGYHNGKNDLEAKKHEFLCSPCTVDQDFSAMTESIEQNLRTVDQVFSSMTESIEQNLCMKCHEGGQLLACKTTTCPLMVHKNCLGASAQLDAKGNFFCPFCAYSHAISEYLESKENASLARKELAIFISKGKLIQAAEFVHEFHRQEHCFSRKNSKCEHIHVKNNEDDQLAGCEDNREDHVGEHANEANDLQFERSKQQAEVLREEEIGKMPTVGRVEESEVPTDHVDGHVGDKFASEKTNIAPESNAEEVPQEMTKQHNIDGTIEPVCAQDTGKEKISEDESEKHSNPLYSLRFRKHETQCKPQAGQVFLGNQLRRKKIPWTAEEEEKIKEGVQKFGKEWKKILQFGSHVFDKVGKRRTPHDLKDKWRNMCKAHSKSK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00048 717 ProSiteProfiles Zinc finger PHD-type profile. 393 442 IPR019787 -
Gma04g00048 717 SMART PHD_3 395 440 IPR001965 -
Gma04g00048 717 MobiDBLite consensus disorder prediction 577 604 - -
Gma04g00048 717 CDD SANT_TRF 658 711 - -
Gma04g00048 717 MobiDBLite consensus disorder prediction 578 598 - -
Gma04g00048 717 Pfam Myb-like DNA-binding domain 659 708 IPR001005 -
Gma04g00048 717 SMART sant 656 712 IPR001005 -
Gma04g00048 717 SUPERFAMILY FYVE/PHD zinc finger 389 443 IPR011011 -
Gma04g00048 717 SUPERFAMILY Homeodomain-like 654 711 IPR009057 -
Gma04g00048 717 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 186 - -
Gma04g00048 717 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 256 712 - -
Gma04g00048 717 Gene3D - 651 713 - -
Gma04g00048 717 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 654 714 IPR017930 -
Gma04g00048 717 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 186 - -
Gma04g00048 717 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 256 712 - -
Gma04g00048 717 ProSiteProfiles Myb-like domain profile. 652 710 IPR001005 -
Gma04g00048 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 448 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00048 649 712 Single Myb Histone (SMH) Gene Family AT1G17520 44.615 4.20e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma04g00048 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00048 - - gmx:102661885 1471.06