Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00025 ATGGCGGTTGGGCAACTTGTTCCTTCGAATTTGTTCCTCAATCATTCTGCTGCTACAACACTCATACCCACTTCCACTCCCCCCAGACACAGACACCTTCTCTGTATTTCTTCTGCCAATCACACAACCGCAACCGATAACGATTCTCCATTCTCAAGTTTCGGAAGAGTGAAGACTCTCCTGGTCCACAGAAGAAGAAAGGACCAAAGCCATAGACGCGCCGTTCAACTTGAAGATGATAATGATGATGATATAGCCCCTAGACCCAGACGTTCTCAGTCTCGGTCACGAGGAGGAGAAAGATGGGATATGATTCCCAATTATACTCCACAAAGCAAATCAGCGACTGACACAAAGTTTTTCAGTCTAAAGTCCTTCAAAGAAATAGGTTGCAGTGAATATATGATTGAATCCCTCCAGAAACTCTTGTTGAGCCGGCCTTCCCATGTACAGGCCATGGCTTTTGCACCTGTTATTAGTGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGTAAGACATTAGCTTATCTCGCACCAATCATCCAGCTCCTTAGACTAGAAGAGCTTGAAGGACGTAGTAGTAAATCCTCTTCACAAGCTCCTAGAGTCCTTGTCCTCGCACCCACGGCTGAGTTGGCTTCTCAGGTCTTAGATAATTGCCGCTCCTTGTCTAAATCTGGAGTTCCATTCAAGTCTATGGTTGTCACCGGAGGTTTTCGCCAAAAAACTCAATTGGAAAATTTACAGCAGGGAGTTGATGTCTTAATAGCTACACCTGGCCGTTTCTTGTTCCTCATCCATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTATCTTGGATGAGGTAGATATACTCTTTGGTGATGAGGACTTCGAAGTGGCTCTTCAATCCTTGATCAATTCTTCACCTGTAGACACACAGTATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTACACCAAATTGGTTGAAGTTTTTCCTGATTGTGAAATGATTATGGGGCCTGGTATGCACCGAATAAGTTCTCGCCTTCAAGAGATTATAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTCTGAACAAGAAAACTGCACTTCTGCAGCTTGTGGAGGAAAATCCTGTCCCAAGAACTATTGTGTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAAAATTTGTTAAAGCGTTTTGATAGAAAAGGAAATCACGTGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGGAAGAGTTTACACGTTCTCCATCAAAAGGAGTCTCCCAGTTTATGGTTTGCACCGACAGAGCATCACGGGGAATAGACTTCACAAGAGTGGATCATGTCATACTCTTTGACTTCCCACGTGATCCCAGTGAATATGTACGGCGTGTTGGAAGAACAGCCAGAGATGAGCAGTTTGATAAGAGATGGTGGAAATTGATTAATAGATTTGAACTAAAGGATGATGAATGGGTTCAGTCATTGTTTGAAGATCGAAAAAAGTGGGTGCCTACATACACTCGGGACATTTCATTGGCTGGGTTGTCAACTACTATAAGTTTTGACATGGAATCCAAAGCTGACTTTGAAACAAAAAAAAAACCTGCATTAAGATCTTTATCACCTTTTGAGAAGCTGCTATCTACAATTTATACTGATGCCATATTTAGAAAATTTCTGTTGGAAATATTGGGAATGATGTCTTGCCATCTACAGAAGGAAACAGAGGAAAGGGCAAATGTAACATTTCTTGTTGATGATTTTGAGGAGCAGAAGAAATTTATTTTTTCTTGGAAGGAAGCAGATTTGCCTAGGAAGAAGTCTATAAACACTGTGAATGCAAACAATTCTGCTAGAAGCACTTTAGAGTCCAACAAGTTGGTTCTTAATGGTTTTGATGTTGAAGAGAAAAATGATGGCTGCCACAGGGCAAAGCCTACTAAGAAAAGGAAGTCATTTAATAAAAGGGAATGCTCTGATCCAGAAAGAATCAAAATCAAGATGCTGGATGATTTCCAAAAGAGGGCGCAGCTGAACTCAGTTTCTGTCATGCATGATGGCTACTATAGCAGTCAACCGGCCATTATAGGGCTGGGGCAATTGCATTCCGTGCCAAGCAGTGGTTCACATCATGAAATGCAGCACAGCATGCAAGGACCGCTTCAAGGACAGCTCACTTTCAGAACGCCAACAGTGCAAGGGTTTTTTGACCTTCAAGATAGTCTAGAAGCTGTGGAACAACCTATTAGGGCCTCGCAGTTCCATGGCATTACATCTAAGCAACTAGATGTTGACAGATCACTTTCCTCGTAG 2370 0.4203 MAVGQLVPSNLFLNHSAATTLIPTSTPPRHRHLLCISSANHTTATDNDSPFSSFGRVKTLLVHRRRKDQSHRRAVQLEDDNDDDIAPRPRRSQSRSRGGERWDMIPNYTPQSKSATDTKFFSLKSFKEIGCSEYMIESLQKLLLSRPSHVQAMAFAPVISGKTCVIADQSGSGKTLAYLAPIIQLLRLEELEGRSSKSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLIHEGFLQLTNLRCAILDEVDILFGDEDFEVALQSLINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEIIVDCSGEDGQEKTPDTAFLNKKTALLQLVEENPVPRTIVFCNKIETCRKVENLLKRFDRKGNHVQVLPFHAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFTRVDHVILFDFPRDPSEYVRRVGRTARDEQFDKRWWKLINRFELKDDEWVQSLFEDRKKWVPTYTRDISLAGLSTTISFDMESKADFETKKKPALRSLSPFEKLLSTIYTDAIFRKFLLEILGMMSCHLQKETEERANVTFLVDDFEEQKKFIFSWKEADLPRKKSINTVNANNSARSTLESNKLVLNGFDVEEKNDGCHRAKPTKKRKSFNKRECSDPERIKIKMLDDFQKRAQLNSVSVMHDGYYSSQPAIIGLGQLHSVPSSGSHHEMQHSMQGPLQGQLTFRTPTVQGFFDLQDSLEAVEQPIRASQFHGITSKQLDVDRSLSS 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00025 789 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 124 152 IPR014014 GO:0003724
Gma04g00025 789 Gene3D - 89 337 IPR027417 -
Gma04g00025 789 SMART helicmild6 400 490 IPR001650 -
Gma04g00025 789 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 530 IPR001650 -
Gma04g00025 789 CDD SF2_C_DEAD 349 488 - -
Gma04g00025 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 497 IPR027417 -
Gma04g00025 789 MobiDBLite consensus disorder prediction 65 109 - -
Gma04g00025 789 SMART ultradead3 143 352 IPR014001 -
Gma04g00025 789 Pfam Helicase conserved C-terminal domain 373 488 IPR001650 -
Gma04g00025 789 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 54 488 - -
Gma04g00025 789 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 337 IPR014001 -
Gma04g00025 789 Pfam DEAD/DEAH box helicase 149 323 IPR011545 GO:0003676|GO:0005524
Gma04g00025 789 CDD DEADc 135 323 - -
Gma04g00025 789 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 54 488 - -
Gma04g00025 789 MobiDBLite consensus disorder prediction 71 98 - -
Gma04g00025 789 Gene3D - 370 524 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00025 Gma-Chr4 211879 223743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00025 123 488 Eukaryotic Initiation Factors Gene Family AT3G19760 26.230 6.48e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00025 K13179 - gmx:100784377 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00025 04 211879 223743 Gma06g00026 06 223825 227241 GST