Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00018 ATGTTAATACAAACTTCTGTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGACCGGATGCCTAGTGGTGAAACTTGGCAGGTGTGTCTGAAATGCAATAAGTACCCTCTTGACTGGTGTAGAAAAGCTGAACCAGTGGAAGAAGATAGAAGGAATGCTGATGATCCTTACAGATCAAGCTGTGTAGTTAGCTTTGGTCAGCCGTCAACTGCTAGTATAATGACAGAAAATACTACACCTAATATGGTATACAGGAGAAAGAAGCTCCGTAAGGACTCAAATTTCAAACTAGGGCCAACTAATGTGCAGGCAAGTGCAAACATCCCTTCAGTCATAAGTTCCGCTGCACATTTATCATCAGCGGAGGATCAGCCAACTGGTTTTCAAGTTAAGCATGCAATTGAAATTGTTAAAGATCCTACGATGCCTTCAGTCTTATTTGATGGAGTAACCAAAGATAGCACACATAAAAACTTAGGTATTAATAGTGTAAATGATAGTTGCTCCTCTTCAAAGCCAAATATGGAAACTGAAATGGATGAAACTGGTGAATGCTCCTCCTCCAGTATTATAGTCATGGATTGCACAAGGGAAGAAGTAACAGAAAAGGATTTCTGCATGAATATTTTAAGAAGCCATGGACTTCTTAAAGAAAATTCTCCGGTAGATAATGTGACTTCTGGGGAAGATGCTGTCACCACTAGTAATAACTGCTGTTCCAGGTCATGCAAAATATGTGGTGATTTAGACAATTCATTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCTGTCTTGCTACAATCCACGTTTGAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTATAAAGAGGCAGAAAATTCTCAAGGAGACAGTTATAAGATCACCAAGTATCCACAATGAATTGGGAAAATGTAGAACTGCCCCAGTTAAGGCTGAATTGAATCCTATACTGTTGATGTTGAGAGACACCAAGCCCTATACAACTGGTGTGCGAGTTGGTAAAGGTTTTCAAGCAGAAGTTCTTGACTGGTCAGGCCCGATAAAAAGTGATGAAGATGCCCTTCCTGAACCATTGGAAATTAGTCCTTCAGAATTTTATAAATTGCTGGGAGAAAATACGAGAAATCCTACTAAACTTAGTTCCATTGGTAATTGGGTTAAATGTCAGGAGATTATAGATAGAGCCAATGGAACTATATGTGGAAAGTGGCGCAGGGCTCCTCTTTTTGAAGTTCAAACTGATGCCTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGCTTGAAACAGATCAAGTACTGAAGCAACTGAAGTATATAGAAATGCTACGGCCTCGACTTGCTGCTAAACGGAAAAAATCAGATTGCACACATAATAGTGATTGA 1467 0.3947 MLIQTSVLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVCLKCNKYPLDWCRKAEPVEEDRRNADDPYRSSCVVSFGQPSTASIMTENTTPNMVYRRKKLRKDSNFKLGPTNVQASANIPSVISSAAHLSSAEDQPTGFQVKHAIEIVKDPTMPSVLFDGVTKDSTHKNLGINSVNDSCSSSKPNMETEMDETGECSSSSIIVMDCTREEVTEKDFCMNILRSHGLLKENSPVDNVTSGEDAVTTSNNCCSRSCKICGDLDNSLNMLLCDHCEDAYHLSCYNPRLKKLPIDEWFCHSCLIKRQKILKETVIRSPSIHNELGKCRTAPVKAELNPILLMLRDTKPYTTGVRVGKGFQAEVLDWSGPIKSDEDALPEPLEISPSEFYKLLGENTRNPTKLSSIGNWVKCQEIIDRANGTICGKWRRAPLFEVQTDAWECFCAIHWDPSHADCAVPQELETDQVLKQLKYIEMLRPRLAAKRKKSDCTHNSD 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00018 488 Pfam PHD-finger 253 298 IPR019787 -
Gma04g00018 488 SUPERFAMILY FYVE/PHD zinc finger 235 303 IPR011011 -
Gma04g00018 488 ProSiteProfiles Zinc finger PHD-type profile. 250 300 IPR019787 -
Gma04g00018 488 PANTHER HISTONE ACETYLTRANSFERASE 21 481 - -
Gma04g00018 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 318 IPR013083 -
Gma04g00018 488 ProSitePatterns Zinc finger PHD-type signature. 253 297 IPR019786 -
Gma04g00018 488 Gene3D - 401 466 - -
Gma04g00018 488 ProSiteProfiles Zinc finger CW-type profile. 397 457 IPR011124 GO:0008270
Gma04g00018 488 SMART PHD_3 252 298 IPR001965 -
Gma04g00018 488 PANTHER REMODELING AND SPACING FACTOR 1 21 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00018 Gma-Chr4 158375 164374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00018 253 302 C2H2 Transcription Factor Family AT3G01460 42.000 7.75e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma04g00018 PHD 2e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00018 - - gmx:100813057 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00018 04 158375 164374 Gma06g00014 06 140088 145256 GST