Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00007 ATGGAATATGGTGGGTTGGTGCAGAATAGTGCATATGGGAGCTTCTCAGAAATTTTTGGCCCAGAAACGGATTTCATAGATGAACTGTTTGTGGAAGGATGCTGGGTGGAAACAAGGGTTGGATCGTACCTGAATTGTGGGGGGGAGGCTAATTCTTCAAAGCCAAACACGATGGCTAGCATGGAGACGTCGGCGCAAATAATATTCCAAGAAGAATCATTATCAGACCCGGAAATTAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCAAGGGAGAATCCGGGGCCATCTTCCTCTGTGAAAGAGAGATTAGTTATTGCAGTCGGGTACTTGAAAGAATACGCCAAGAATTCCAATTTGCTGATTCAGGTATGGGTACCCGAACGGAGGAGATCTGCACGTGCTCAGCCTCAGGATAACTACCCATACGCCGCGCTTCTTAATACAACATCAGCTTTTCAGTTTCAGGAGGATTGGGTTCATGACCAGTGGACTCCCAACATCCGCTTCTTCAGAAGTCACGAGTACCCGCGCCATCTACGACGTCCTGGATCTCTCGCACTTCCTGTCTTTGAGAGTGGCTCCGCCATGTGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACCCCGACCTTCACGCCCTTCAGAGTGTTGATTTTACAAGCAGTACTTGTCATCAGAACTTTATTCCACCTGCAGCCGTGACCGCGAAGGGTTTTGACGAGTTGTACCAAAGTGCATTAAATGAGATAGTAGAAGTTTTGACGTGTGTATGCAAGGCGCATAACTTGCCTTTAGCTCTCACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGTGGGCATTCAAACGATGAGAATTATGTGTCGATTGTGGATCCTGCTAGTTTTGTGGCGGATGTAGAGGTACTGGGTTTCCTGGAAGCGTGCTCTGAGTGTCACCTTTTGGGGGGGCAAGGAGTAGTTGGGACAGCTTTCACAACCACCAAACCTTGTTTTGCAAATGACATAACTGCCTTCAGCAAGGCGGAATATCCTCTGGCGCACCATGCTAACATGTTTGGCTTGCATGCTGCGGTGGCCATTCCACTCCTGAGTGACTCCGCTGATTTTGTGTTAGAGTTTTTCCTGCCAAAGGATTGCCATGACACCCAAGAGCAGAAGCAGATGCTCAACTCCTTGTCTATGCTAGTACAACAAGCTTGCAGGAGTTTGCATGTTGTCATGGGAAaggaggaggaggaggaggaggaggaggaggaATTAATCGCGTTGCCGCCCGTTGGCAAAGAAATGGAGTCATCATCATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTCTCGGTGTCCTTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAGAGTGACAACCAACTGCAATGAACAGGTTAGTGTTGGTGTTGAGAGTGGGGGAGGAGAAGAATCATATACTGCAGCTTTTGGTGGCCGCCGGGGTGCCAGGAAATCAGCTGGCGACAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCGGTTCTTCGACAATACTTTGCAGGAAGCCTGAAAGACGCTGCCAAGAGCATTGGCGTATGTCCTACCACTCTTAAAAGGATATGCCGACAACATGGGATCACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCCTTAAGAAAACTTCAACTTGTCATCGATTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTCCCAGAGTTGAGCTCTGCCAATGGTGTTTCTGAATCATCCAACATCAATAATAAGTTTTTTTCTGAATATAACCAAGGAGCTACTACTTTCAAATCCCCAACTTCGCCTTGCAGTCAGACCACTATTCTGATTTCAGAGAACCAACAACCACTTGTACTTGGTGCATCAATCCAGGTCCAAGAGGAAGCAAAACATTTCGCCCACCATCTTGAGCCTCTACCACCAGCTCCCTTGCCCCAATCTAGTACTAGTCTCTGGAACACGGCCGGCACTTTTAGAGTCAAAGCTACTTTTGGGGATGAAAAAATCCGCTTTAGCTTGCAACCAAACTGGGGATTCAGAGATTTGCAGATGGAGATTGCTAGACGTTTCAATCTAAACGAGATTAGCAACATTCAGCTCAAGTATTTGGATGATGCTCGAGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGACGAGTGTAAAGACATAAATACATCATCTCAGAGCCGTACAATTAGACTCTTCCTCTTTCAAGCTTCGCCTCTAAATCATGCAAATGCATTTCGAGGCACCAGCCCCTCCTAG 2358 0.4673 MEYGGLVQNSAYGSFSEIFGPETDFIDELFVEGCWVETRVGSYLNCGGEANSSKPNTMASMETSAQIIFQEESLSDPEISLMVGKRWWIGPRENPGPSSSVKERLVIAVGYLKEYAKNSNLLIQVWVPERRRSARAQPQDNYPYAALLNTTSAFQFQEDWVHDQWTPNIRFFRSHEYPRHLRRPGSLALPVFESGSAMCLGVVEILMPNNPDLHALQSVDFTSSTCHQNFIPPAAVTAKGFDELYQSALNEIVEVLTCVCKAHNLPLALTWAPCIQQGKSGCGHSNDENYVSIVDPASFVADVEVLGFLEACSECHLLGGQGVVGTAFTTTKPCFANDITAFSKAEYPLAHHANMFGLHAAVAIPLLSDSADFVLEFFLPKDCHDTQEQKQMLNSLSMLVQQACRSLHVVMGKEEEEEEEEEELIALPPVGKEMESSSSSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFRVTTNCNEQVSVGVESGGGEESYTAAFGGRRGARKSAGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSANGVSESSNINNKFFSEYNQGATTFKSPTSPCSQTTILISENQQPLVLGASIQVQEEAKHFAHHLEPLPPAPLPQSSTSLWNTAGTFRVKATFGDEKIRFSLQPNWGFRDLQMEIARRFNLNEISNIQLKYLDDAREWVLLTCDADLDECKDINTSSQSRTIRLFLFQASPLNHANAFRGTSPS 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00007 785 Pfam RWP-RK domain 519 566 IPR003035 -
Gma04g00007 785 Pfam PB1 domain 687 769 IPR000270 GO:0005515
Gma04g00007 785 SMART PB1_new 687 770 IPR000270 GO:0005515
Gma04g00007 785 CDD PB1_NLP 688 769 IPR034891 -
Gma04g00007 785 ProSiteProfiles RWP-RK domain profile. 505 586 IPR003035 -
Gma04g00007 785 ProSiteProfiles PB1 domain profile. 687 770 IPR000270 GO:0005515
Gma04g00007 785 PANTHER PROTEIN NLP2 26 780 - -
Gma04g00007 785 MobiDBLite consensus disorder prediction 493 514 - -
Gma04g00007 785 Gene3D - 688 770 - -
Gma04g00007 785 PANTHER PROTEIN NLP8 26 780 IPR045012 GO:0003700
Gma04g00007 785 SUPERFAMILY CAD & PB1 domains 677 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00007 Gma-Chr4 74065 76794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00007 6 779 NLP Transcription Factor Family AT4G35270 41.728 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma04g00007 PB1 3.3e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00007 - - gmx:100787220 1539.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00007 04 74065 76794 Gma04g00007 04 74065 76794 ECH
Gma04g00007 04 74065 76794 Gma06g00004 06 46146 48711 GST