Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02425 ATGTGTGGAGGAGCTATCATCTCTGATTTCATTCCGGCGGCGGCGATCGCCGGGTCTCGCCGCCTGACCGCCGATTACCTGTGGCCGGATTTGAAGAAGCGGAAGTCTGACTTGGACGTTGACTTCGAGGCTGATTTCAGGGATTTTAAAGACGATTCTGATATCGACGACGACGACGACGATCACCAAGTCAAGCCCTTTGCTTTCGCCGCCTCTTCTCGTCTGTCTACGGCAGCGAAATCTGTGGCATTCCAAGGTCGGGCTGAGATATCTGCAAATAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAACGCCCTTGGGGAAAATGGGCAGCTGAGATTCGGGATCCAAGAAAGGGGGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCTGAGGCACCAGGTACTTCTTCTGTAAAACGTTCCAAGGTAAATCCACAGGAAAATCTTAAGACTGTTCAGCCCAATCTGGGTCACAAGTTCAGTGCTGGCAACAATCACATGGATCTGGTGGAACAGAAACCCCTAGTTAGCCAGTATGCTAACATGGCTTCCTTCCCTGGCAGTGGAAATGGGCTAAGATCCCTTCCTTCGTCTGATGATGCAACCCTTTACTTCAGTTCAGATCAAGGGAGTAATTCATTTGATTATGCTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGTGAATCTCATTTTGTGCAAAATGCCAACCAGCAGCAGCCTAACTCTCAGAATGTGGTATCTATTGAAGATGATTCTGCAAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTCTTTCAGATGCCTTATCTTGAAGGGAGCTGGGGCGATACTTCATTGGAATCCTTGCTATCTGGTGACACAACTCAGGATGGTGGAAACCTCATGAACCTTTGGTGCTTTGATGACATTCCTTCCATGGCTGGTGGAGTTTTCTGA 1038 0.4807 MCGGAIISDFIPAAAIAGSRRLTADYLWPDLKKRKSDLDVDFEADFRDFKDDSDIDDDDDDHQVKPFAFAASSRLSTAAKSVAFQGRAEISANRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEAPGTSSVKRSKVNPQENLKTVQPNLGHKFSAGNNHMDLVEQKPLVSQYANMASFPGSGNGLRSLPSSDDATLYFSSDQGSNSFDYAPEISSMLSAPLDCESHFVQNANQQQPNSQNVVSIEDDSAKTLSEELVDIESELKFFQMPYLEGSWGDTSLESLLSGDTTQDGGNLMNLWCFDDIPSMAGGVF 345
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02425 345 Gene3D AP2/ERF domain 98 157 IPR036955 GO:0003700|GO:0006355
Gma03g02425 345 SMART rav1_2 99 162 IPR001471 GO:0003700|GO:0006355
Gma03g02425 345 PANTHER DNA-BINDING DOMAIN 1 338 IPR044808 GO:0003700|GO:0009873
Gma03g02425 345 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
Gma03g02425 345 CDD AP2 99 158 IPR001471 GO:0003700|GO:0006355
Gma03g02425 345 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Gma03g02425 345 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Gma03g02425 345 ProSiteProfiles AP2/ERF domain profile. 99 156 IPR001471 GO:0003700|GO:0006355
Gma03g02425 345 PANTHER EREBP TRANSCRIPTION FACTOR 1 338 - -
Gma03g02425 345 SUPERFAMILY DNA-binding domain 99 156 IPR016177 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma03g02425 Gma-Chr3 49282278 49284855 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02425 1 345 AP2-EREBP Transcription Factor Family AT1G53910 46.770 6.67e-63 202
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma03g02425 AP2 1.7e-12 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02425 K09286 - gmx:100170723 647.891