Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02419 ATGGGTGACTCTTCCGCGGCTAATGACCATTTGGGTGAATCCCCGGCCGTTGAGTTAACCGGAAAGATAATGATTGTGGTTATTATTATCATGTTCTTCGTTATTGTAATTGCTCTCTGCCTTCATCTCTTCGCCAGAAACTTCTGGTGGCGCAGCCCTGCTCCCCAATCTCGCAGCCACCGCCGCCGCCGCTTTGTTTTCTCGTCCGGTCCAGACGGTGGAAGCGGACTGGATCCCGCGGTGCTGAGCTCCCTACCGGTGTTGGTATTCGAAGGCCATGCCCAAGAGTTTAAGGATGGTTTGGAATGTGCGGTTTGCCTCTCCGAGGTTGTCGAAGGAGAAAAGGCCAGGCTTTTGCCTAAATGCAATCATGGGTTTCACGTTGCTTGTATTGACATGTGGTTCCAATCCCATTCTACTTGCCCTCTTTGCAGGAACCCTGTTGCATCCTCAGAAGAATCTTCAGAATCTCCCACTTTTCCCACAAACGTCTTGGTTTGGGGGAATCAAGCTCAAATAAGTTCTACTGGTGGTGGTGGTGCTTCTTTGGAGGAAGGTTCATCCTCATCCTCTTCCGCTTCTACTTGTGATGATCATGGAATGTTGGTGATTGATATACCAAGTGAGATGACTTCAACCTCTCTGTCGCCTGAAGATGACGTCAAATCGCCTATGACGGGAAGACTCAGGTCATTGAAGAGGCTTTTGAGCAGGGACAAAAGGTTTAATCCTTCCAGTCCTACTTCTTCTCCAGATGTACAACAACCAGGATCAGGGAGCTGA 783 0.493 MGDSSAANDHLGESPAVELTGKIMIVVIIIMFFVIVIALCLHLFARNFWWRSPAPQSRSHRRRRFVFSSGPDGGSGLDPAVLSSLPVLVFEGHAQEFKDGLECAVCLSEVVEGEKARLLPKCNHGFHVACIDMWFQSHSTCPLCRNPVASSEESSESPTFPTNVLVWGNQAQISSTGGGGASLEEGSSSSSSASTCDDHGMLVIDIPSEMTSTSLSPEDDVKSPMTGRLRSLKRLLSRDKRFNPSSPTSSPDVQQPGSGS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02419 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 150 IPR013083 -
Gma03g02419 260 SUPERFAMILY RING/U-box 97 150 - -
Gma03g02419 260 SMART ring_2 103 144 IPR001841 -
Gma03g02419 260 MobiDBLite consensus disorder prediction 223 240 - -
Gma03g02419 260 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 251 IPR044675 -
Gma03g02419 260 MobiDBLite consensus disorder prediction 175 197 - -
Gma03g02419 260 PANTHER RING-H2 FINGER PROTEIN ATL3 3 251 - -
Gma03g02419 260 CDD RING-H2_EL5_like 102 145 - -
Gma03g02419 260 Pfam Ring finger domain 102 145 IPR001841 -
Gma03g02419 260 MobiDBLite consensus disorder prediction 175 260 - -
Gma03g02419 260 MobiDBLite consensus disorder prediction 241 260 - -
Gma03g02419 260 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02419 Gma-Chr3 49247991 49249170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02419 18 243 C3H Transcription Factor Family AT1G53820 42.373 1.83e-59 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02419 - - gmx:100797420 451.055