Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02416 ATGGTGGAGTTTCAAAGGTTTTTGCTGTTGCTGTGCATCACCACCTGCATTCTTTGTTGGATACCCAATAGTGCCACTGCCGCCACAGATCCAAACGATGCTGCTGCTGTGAGATTTTTGTTTCAAAATATGAACTCACCACCCCAGCTAGGTTGGCCTCCTAATGGTGATGATCCATGTGGACAATCTTGGAAAGGCATCACTTGCTCAGGCAACCGTGTTACAGAGATTAAGCTATCTAATCTTGGACTAACTGGATCGGTTCCTTACGGATTACAAGTCTTGACATCTTTGAATGACCTAGACATGAGTAGCAACCGTCTTGGTGGAAGCATACCTTACCAACTTCCTCCATATTTGCAGCGCTTAAATCTTGCTTATAATAACATCACAGGGACAGTCCCTTACTCTATTTCTAACTTGACCGCTCTTACAGACCTGAATCTTGGTCACAATCAGCTCCAGCAAGGACTGGGTGTCGACTTTCATAATCTTTCTACTCTCTCCACATTGGATCTCTCCTTCAATTCTCTAACAGGTGACCTCCCTCAGACTATGAGCTCACTTTCACGCATAACCACCATGTATCTGCAAAATAACCAGTTTACAGGCACTATTGATGTCCTTGCTAATCTGCCTCTGGATAATCTGAATGTGGAAAACAATAATTTTACTGGATGGATACCGGAACAGTTGAAGAACATAAACCTACAGACCGGTGGTAATGCATGGAGCTCAGGTCCTGCACCCCCACCTCCTCCAGGGACGCCTCCAGCACCTAAAAGCAACCAGCACCACAAGTCTGGTGGTGGAAGTACCACCCCCTCAGATACTGGCAGTGGCAGCAGCTCAATTGAAGAGGGCAAAAAATCTGGTATCGGAGGTGGTGCCATAGCTGGAATTGTGATCTCGGTCATAGTTTTGGGGGCAATAGTAGCATTCTTTCTGGTGAAGAGAAAATCCAAGAAGTCATCTTCTGATTTAGAAAAGCAGGATAATCAGTCCTTTGCTCCACTTCCTTCAAATGAAGTGCATGAAGAAAAGTCCATGCAAACTTCCTCTGTAACAGACTGGAAGACGTTTGATACTTCTGGCTCAATAAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTTGATGAGGAAGAATTCTCCAAGAAGCCCACAATTGTGAAGAAGACTGTAACAGCTCCTGCAAATGTGAAATCATATTCTATTGCTGAACTGCAGATTGCTACTGGCAGCTTCAGTGTGGATCACCTTGTTGGTGAGGGGTCTTTTGGGCGTGTATACCATGCTCAATTTGATGGACAGGTTCTTGCTGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATTTGACAGATGATTTTATAGAAATAATTTCAAACATCTCCAATTTACATCATCCAAATGTGACAGAGCTTGTAGGTTATTGCTCAGAGTATGGACAACACCTCTTGGTCTATGAGTTTCATAAAAACGGATCACTGCATGACTTCCTTCACCTACCAGATGAATATAGTAAACCATTGATATGGAATTCGCGTGTCAAGATTGCTTTGGGGACTGCACGTGCTCTAGAGTACCTACATGAAGTTAGTTCGCCATCAGTTGTTCATAAGAATATTAAGTCAGCCAACATATTACTGGATACAGAGCTTAATCCTCATCTTTCAGATAGTGGATTGGCAAGTTATATTCCAAATGCGGACCAGATATTGAACCATAATGTTGGATCTGGATATGATGCACCTGAAGTTGCCTTGTCTGGTCAGTATACTTTGAAAAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAACTTCTCAGCGGACGGAAACCATTTGATAGCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCAATGAAAGGGCTATATCCTGTTAAGTCTCTTTCTCGATTTGCCGATGTTATTGCTCTTTGCGTTCAGCCGGAGCCAGAATTCCGACCACCAATGTCAGAAGTGGTTCAAGCACTGGTGCGATTAGTGCAGCGAGCTAACATGAGCAAGCGAACATTTAGTAGTAGTGATCATGGAGGATCCCAACGAGGGAGTGATGAGCCAGTTCTACGAGACATCTAA 2169 0.4357 MVEFQRFLLLLCITTCILCWIPNSATAATDPNDAAAVRFLFQNMNSPPQLGWPPNGDDPCGQSWKGITCSGNRVTEIKLSNLGLTGSVPYGLQVLTSLNDLDMSSNRLGGSIPYQLPPYLQRLNLAYNNITGTVPYSISNLTALTDLNLGHNQLQQGLGVDFHNLSTLSTLDLSFNSLTGDLPQTMSSLSRITTMYLQNNQFTGTIDVLANLPLDNLNVENNNFTGWIPEQLKNINLQTGGNAWSSGPAPPPPPGTPPAPKSNQHHKSGGGSTTPSDTGSGSSSIEEGKKSGIGGGAIAGIVISVIVLGAIVAFFLVKRKSKKSSSDLEKQDNQSFAPLPSNEVHEEKSMQTSSVTDWKTFDTSGSINLKPPPIDRHKSFDEEEFSKKPTIVKKTVTAPANVKSYSIAELQIATGSFSVDHLVGEGSFGRVYHAQFDGQVLAVKKIDSSVLPNDLTDDFIEIISNISNLHHPNVTELVGYCSEYGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALEYLHEVSSPSVVHKNIKSANILLDTELNPHLSDSGLASYIPNADQILNHNVGSGYDAPEVALSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQSLVRWATPQLHDIDALAKMVDPAMKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFSSSDHGGSQRGSDEPVLRDI 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02416 722 Gene3D Ribonuclease Inhibitor 31 250 IPR032675 -
Gma03g02416 722 Pfam Protein tyrosine and serine/threonine kinase 420 688 IPR001245 GO:0004672|GO:0006468
Gma03g02416 722 MobiDBLite consensus disorder prediction 244 288 - -
Gma03g02416 722 ProSitePatterns Protein kinases ATP-binding region signature. 423 445 IPR017441 GO:0005524
Gma03g02416 722 Pfam Leucine rich repeat 118 154 IPR001611 GO:0005515
Gma03g02416 722 ProSiteProfiles Protein kinase domain profile. 417 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02416 722 Gene3D Transferase(Phosphotransferase) domain 1 495 710 - -
Gma03g02416 722 MobiDBLite consensus disorder prediction 261 287 - -
Gma03g02416 722 MobiDBLite consensus disorder prediction 246 260 - -
Gma03g02416 722 SUPERFAMILY Protein kinase-like (PK-like) 399 688 IPR011009 -
Gma03g02416 722 PANTHER OS01G0253100 PROTEIN 23 716 IPR045271 GO:0004714|GO:0006468
Gma03g02416 722 MobiDBLite consensus disorder prediction 699 722 - -
Gma03g02416 722 MobiDBLite consensus disorder prediction 323 357 - -
Gma03g02416 722 Gene3D Phosphorylase Kinase; domain 1 378 493 - -
Gma03g02416 722 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 23 716 - -
Gma03g02416 722 SUPERFAMILY L domain-like 29 234 - -
Gma03g02416 722 MobiDBLite consensus disorder prediction 330 357 - -
Gma03g02416 722 Pfam Leucine rich repeat N-terminal domain 41 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02416 Gma-Chr3 49226602 49234308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02416 5 701 Strubbelig Receptor Gene Family AT1G53730 65.816 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gma03g02416 PK_Tyr_Ser-Thr 5.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02416 - - gmx:100807707 1289.25