Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02410 ATGGAGGATGGGAGCAGGGTTCCGGCGGGGGATGACCCCTCTTACTGGCTGGATGCGTGTGAGGACATATCGTGCGATGATTTCATTGATTTTGATGTCTCTTCCATCGTCTCTGACCAGCCCGACAATCCTTCCAATCAGGACTTCTTCGGTGGCATTGATAAGATTTTGGACAGCATCAAGAACGGTGCTGGTCTCCCTCTCAATCATGCTGTTGAACCACCCAATAATAATGGCACTGCAGCAGGAGAAGTGTGCTTGCCTTCCAATGCCACTCTTGAGGATGGTGCTCCTGCTGCTGATGCTTTTGACCATTCTGGTGGCGTTGCTCGGAGTAACGGCTCCAGTAAGCTGTCTAATGGGAACGAAACAGGAGTTTTGGTTAATTATTCTCAGGAAAGAGGGGCACCCCCTCTGAATGGAGGCCACGATTTTGATGGTGAAGAAAGGTGCAGCAAAAGGGCTTGGCTTGGCGGCTACAATAATGAGAGGCCTTATTATTGTAGAGGGAATTATCAAGGCAAGGAGAGGGAGAGGTGTTTTAATAATAATAACAGGAAGAGGCCACGGGGTGATAGGGATGAAATTGACAGGAAAGATAAGGATGGTGGTGGAAGGAAAAGAGAACATTATGGTGCTGTTGCCAGGAGGGATGTTAGAGATAGGGATTGTAGGGATAGAGAAACTAGGGGTTACTGGGAGAGGGATAAGTCAGGTTCCACTGATATGATCTTTCGCACTGGCGCTTGGGAACCTGATCATAATCGAGATGACAAAATGGTGATTGACACCAAACTGGAGAACTATGGAAAGCTTGATAAGAAGTCCGAGGATGCTATTGAGAGGGTTCCTGAGGAAAAAGCTAGACAGTATCAGTTAGATGTTCTTGAGCAATCAAAAAGGAAAAATACCATAGCTTTTCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATTAAAAGTATACAAGATAGTTTGCAGAAGCAAAATAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGcaagctgaagtaattcGTGAGCGGACTGGTTATCAAGTAGGCCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACACCAAACATGTTTTAGTCATGACTGCCCAAATTCTTTTAAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGCCACCATGCAGTGAAGAAACACCCATATTCACTGGTGATGTCCGAGTTCTACCATACAACACCCAAAGAGAACAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCTATAGTTTGCACCATTAAAGATCGGAAGGAGCTGGAGAAACATGTGCCGATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCTGCCAGTTTATGTTATCTACACGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATATAGTTCAAGGAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAAGAAGAGCTGCGCCAAGTATATGGCGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACTTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAACTGGGACAATGGTGCGCTTATAAGGTTGCACTATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAACTACCAGCTTGATGTCAAGTTTCAGGAAACTTATTTGAGTAAAGTTGTCTCGCTTCTGAAATGCCAACTGTCAGAGGGTGCAGCTTCTGACAAAAATGCTGGTATTGATGACTCAGAGAATGGTGCAGCTCAAAGTGGGTCTGAACATGAAGAGATGGAAGAAGGAGAGCTTCCAGACAGTCATGTTGTCTCTGGCGGGGAGCACGTGGATGTTATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCACTAATCAAAATACTTCTCAAGTATCAGCATACAGAAGATTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTGCCCAAGGTCTTTGCAGAGCTTCCATCACTTAGTTTTGTGAAGTGTGCAAGTTTGATTGGTCATAATAACAGTCAGGAAATGCGAACTTACCAAATGCAGGATACAATTGCCAAATTCCGTGATGGACGGGTCACATTGTTGGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGTCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAGACTGTTCTGGCATATATTCAGTCCAGGGGACGTGCTAGAAAGCCTGGATCTGATTACATCCTGATGGTTGAGAGGGACAATTTGTCACATGAAGCATTCCTAAGGAATGCCAAGAACAGTGAGGAAACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAGGACACTTCAAGATTGATTTCTGTTGACACCCGGCCCGGAACAGTTTACCAGGTGAAGTCAACCGGTGCAGTTGTGAGCCTAAATTCTGCTGTAGGTCTTATCCACTTTTACTGCTCTCAGTTACCTAGTGACAGATATTCAATTCTTCGCCCTGAGTTTATTATGGAGAGGCATGAAAAACCAGGAGGTCCCACGGAATATTCTTGCAAGCTTCAACTACCGTGTAATGCACCGTTTGAAAATCTTGAGGGTCCAATATGCAGTTCTATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGTGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGATGAACAAACTGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGGGAGTTCTACCCTGAAGGTGTGGCTGACATACTGAAGGGAGAGTGGATCTTATCTGAAAAAGATGCTTGCAACAACTACAAATTACTTCATCTTTATATGTATGCCGTGAAGTGTGAAAATCTTGGCCATTCAAAGGATCCGTTCTTGACTCAAGTTTCAAATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGGCATCTCTTGTCTTTAGTGGGTTGATAAATATCACTGAGAGTCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAGGCATATTTGTTTGTCCCAATGGTTGGCGATAAGTCCGTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAGAATCCCCTCCAGAAAGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCTACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTGGTTCCTAACAGAGACGCCATGCAAACACAAAAGCACATCAATATGACTACCAATGGAAAATTAATGATGGCGGATATCTGTACTAATGCAGAGGATCTGGTTGGGAGAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCAATATGCTATGACATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGTTCATATGCTGATTACTACAAGCAAAAGTATGGGGTTAATTTGATTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTCTGTCTCCTCGATTTGAGCACAGTGAAGCTCATGAAGGTGAATCTGAAGAGATACATGACAAAACTTATTATGTTTTCCTTCCTCCTGAGCTATGCCTCGTACACCCACTGCCTGGATCACTTGTCCGTGGTGCCCAGAGGTTGCCTTCGATAATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAGCTTAAGAATATGATAAATTATCCTGTCCTGGCTTCAAAGATCTTGGGAGCCTTGACTGCCGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTTGGAGATGCTTACCTGAAATGGGTTGTTAGTCGATTTCTTTTCCTAAAATATCCACAGAAACATGAAGGTCAACTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGTTTTGCTCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAGGATACCAAGGATGGGGAGTCATCTTTGTTTGACCAGGAGCGATCCATTTCCAAGATCGAGAGGATGGATTGTCACACGAATGGATATGAGGATGAGATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTTCTATCCAGTAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGGGTATATTATGTGGAAGGTGGTAAGAATGCTGCCAACCACCTTATGAAATGGATTGGCATTCAAATAGAGTTTGATCCTGATACAATGGAGTGTACAAAAAAGCCATTTAATGTTCCTGACAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTAAATATGAAGTTTAACGACAGGGGGCTGCTGGTAGAATCCATAACTCATGCCTCCCGGCCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGCGATGCTGTCTTGGATCATCTTATTACCAGGCACTTGTTTTTCACTTACACAAATCTGCCACCGGGACGTCTGACTGACCTTCGGGCTGCTGCTGTAAACAATGAAAATTTTGCGCGTGTTGCAGTTAAGCACAACCTTCATGTGCATCTCAGACATGGATCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGTCGAATTGTCAAAGCCAGGTTTTAATTCCTTTGGTCTGGGAGACTGTAAAGCCCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCAGGTGCCATTTTTCTTGACAGTGGGAGGGACACTACTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACCCCAGAGACTCTGCCGATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAAGCTGAAGGCTTAGAGTATAAAGCAAGTCGTATTGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGGGTCCAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCGCAGAAATTAGCTGCAAGAAATGCCCTTGCTGCTTTGAAAGAGAAAGAGGTGGGAAAAACTCAGGAGAAGAATGATGAAAACGGGAAAAAGAATGGAAACCAGACATTTACTAGGCAAACATTGAATGATATATGTTTACGAAGAAATTGGCCTATGCCATTCTACAGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCGGTGCGTGTCAATACTACTGATAGAGGATGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGTGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAACTACTGAACAAATTATACTCGTGA 5844 0.437 MEDGSRVPAGDDPSYWLDACEDISCDDFIDFDVSSIVSDQPDNPSNQDFFGGIDKILDSIKNGAGLPLNHAVEPPNNNGTAAGEVCLPSNATLEDGAPAADAFDHSGGVARSNGSSKLSNGNETGVLVNYSQERGAPPLNGGHDFDGEERCSKRAWLGGYNNERPYYCRGNYQGKERERCFNNNNRKRPRGDRDEIDRKDKDGGGRKREHYGAVARRDVRDRDCRDRETRGYWERDKSGSTDMIFRTGAWEPDHNRDDKMVIDTKLENYGKLDKKSEDAIERVPEEKARQYQLDVLEQSKRKNTIAFLETGAGKTLIAVLLIKSIQDSLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKYSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVALSFLAALQNDERANYQLDVKFQETYLSKVVSLLKCQLSEGAASDKNAGIDDSENGAAQSGSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERDNLSHEAFLRNAKNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKDEQTDEGDPLPGTARHREFYPEGVADILKGEWILSEKDACNNYKLLHLYMYAVKCENLGHSKDPFLTQVSNFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFSGLINITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSVDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDAMQTQKHINMTTNGKLMMADICTNAEDLVGRIVTAAHSGKRFYVDSICYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVNLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEEIHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVLASKILGALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKIERMDCHTNGYEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDTMECTKKPFNVPDSILRSVDFDALEGALNMKFNDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQVELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKTQEKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02410 1947 CDD RIBOc 1410 1587 IPR000999 GO:0004525|GO:0006396
Gma03g02410 1947 MobiDBLite consensus disorder prediction 109 123 - -
Gma03g02410 1947 MobiDBLite consensus disorder prediction 635 666 - -
Gma03g02410 1947 Gene3D - 1875 1945 - -
Gma03g02410 1947 PANTHER DICER-RELATED 251 1945 - -
Gma03g02410 1947 Pfam Dicer dimerisation domain 883 971 - -
Gma03g02410 1947 SUPERFAMILY dsRNA-binding domain-like 1873 1943 - -
Gma03g02410 1947 ProSiteProfiles PAZ domain profile. 1226 1366 IPR003100 GO:0005515
Gma03g02410 1947 CDD SF2_C_dicer 688 818 - -
Gma03g02410 1947 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 695 855 IPR001650 -
Gma03g02410 1947 MobiDBLite consensus disorder prediction 1848 1862 - -
Gma03g02410 1947 MobiDBLite consensus disorder prediction 97 123 - -
Gma03g02410 1947 MobiDBLite consensus disorder prediction 649 666 - -
Gma03g02410 1947 Pfam Helicase conserved C-terminal domain 691 808 IPR001650 -
Gma03g02410 1947 Gene3D Dicer dimerisation domain 878 979 IPR038248 -
Gma03g02410 1947 CDD PAZ_CAF_like 1219 1368 - -
Gma03g02410 1947 CDD RIBOc 1626 1781 IPR000999 GO:0004525|GO:0006396
Gma03g02410 1947 MobiDBLite consensus disorder prediction 1848 1868 - -
Gma03g02410 1947 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 295 472 IPR014001 -
Gma03g02410 1947 MobiDBLite consensus disorder prediction 969 996 - -
Gma03g02410 1947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 822 IPR027417 -
Gma03g02410 1947 Pfam PAZ domain 1251 1386 IPR003100 GO:0005515
Gma03g02410 1947 Gene3D Ribonuclease III domain 1388 1583 IPR036389 GO:0004525|GO:0006396
Gma03g02410 1947 Gene3D Ribonuclease III domain 1606 1779 IPR036389 GO:0004525|GO:0006396
Gma03g02410 1947 Gene3D - 282 526 IPR027417 -
Gma03g02410 1947 Gene3D paz domain 1242 1364 - -
Gma03g02410 1947 CDD DEXHc_dicer 287 486 - -
Gma03g02410 1947 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 251 1945 - -
Gma03g02410 1947 SUPERFAMILY PAZ domain 1242 1366 IPR036085 GO:0005515
Gma03g02410 1947 SUPERFAMILY RNase III domain-like 1609 1780 IPR036389 GO:0004525|GO:0006396
Gma03g02410 1947 MobiDBLite consensus disorder prediction 972 996 - -
Gma03g02410 1947 MobiDBLite consensus disorder prediction 179 220 - -
Gma03g02410 1947 ProSitePatterns Ribonuclease III family signature. 1645 1653 IPR000999 GO:0004525|GO:0006396
Gma03g02410 1947 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1869 1944 IPR014720 -
Gma03g02410 1947 SUPERFAMILY RNase III domain-like 1382 1587 IPR036389 GO:0004525|GO:0006396
Gma03g02410 1947 CDD DSRM_DCL_plant 1875 1936 - -
Gma03g02410 1947 Gene3D - 681 847 IPR027417 -
Gma03g02410 1947 Pfam Ribonuclease III domain 1645 1758 IPR000999 GO:0004525|GO:0006396
Gma03g02410 1947 Pfam Ribonuclease III domain 1423 1569 IPR000999 GO:0004525|GO:0006396
Gma03g02410 1947 SMART helicmild6 724 810 IPR001650 -
Gma03g02410 1947 Gene3D - 1782 1860 - -
Gma03g02410 1947 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1869 1942 - -
Gma03g02410 1947 ProSiteProfiles Ribonuclease III family domain profile. 1610 1758 IPR000999 GO:0004525|GO:0006396
Gma03g02410 1947 SMART riboneu5 1405 1589 IPR000999 GO:0004525|GO:0006396
Gma03g02410 1947 SMART riboneu5 1625 1781 IPR000999 GO:0004525|GO:0006396
Gma03g02410 1947 SMART ultradead3 284 487 IPR014001 -
Gma03g02410 1947 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1784 1847 IPR014720 -
Gma03g02410 1947 SMART DRBM_3 1870 1943 IPR014720 -
Gma03g02410 1947 SMART DRBM_3 1785 1846 IPR014720 -
Gma03g02410 1947 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 883 978 IPR005034 GO:0016891
Gma03g02410 1947 Pfam Type III restriction enzyme, res subunit 289 454 IPR006935 GO:0003677|GO:0005524|GO:0016787
Gma03g02410 1947 SMART PAZ_2_a_3 1226 1390 IPR003100 GO:0005515
Gma03g02410 1947 ProSiteProfiles Ribonuclease III family domain profile. 1410 1569 IPR000999 GO:0004525|GO:0006396
Gma03g02410 1947 SUPERFAMILY dsRNA-binding domain-like 1740 1866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02410 Gma-Chr3 49138186 49149789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02410 707 850 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 3.07e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02410 K11592 - gmx:100780953 3831.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02410 03 49138186 49149789 Gma03g02410 03 49138186 49149789 ECH