Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02395 ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACCTTGACGAGGAAAATTATATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGATGATGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGTTGAAGAACATGAATATGAGGACTCAGCAGCTGAGGCTGGTGGGAAAGACCAATTGCCTGAAGCAGAAAAAAGTGACATTGCTACTGAATTTGGGGATGATGAGCAAAAATTGTCTTTCATTGATGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCCCTTCCACCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGAATTGTGCGAGCCTATGGGTGATATTCTTGAGGTGCGACTAATGAAAGACAGGGACACTGGAGAACACAAGGGTTATGCCTTTGTGGCTTTTAAAACAAAAGAGGTAGCACAAAAGGCTATTGAGGAGATACATAGCAAGGAATTTAAGGGGAAAACTTTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACTTGGACTGAAGATGATTTTAGGAAAGTTGTTGAAGGTGTTGGTCCCGGAGTTGAAACCATTGAGCTCATAAAGGATCCTCAAAATCCTAGTAGGAATCGTGGGTTTGCGTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCGCGGCAAAAGATGGCAAGTTCTAGCTTTAAGCTGGATGGCAACACCCCAACTGTCACATGGGCAGATCCAAAGAACTCACCTGACCATTCTGCTTCTTCACAGGTTAAAGCTCTATACGTCAAAAACATACCAGAGAATGTTACCACTGAACAATTGAAGGAACTATTCCGCCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGCGATTTTGGTTTTATTCATTATGCGGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACAGAGAAATATGAAATTGATGGCCAAATGCTTGAAGTTGTTCTTGCCAAGCCTCAAGCTGATAAAAAACCTGATGGAGGTTATGCCTACAATCCTGGACTTCATCCGAACCATGTTCCACATCCTGCATATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGCTGCTGGTTATCAACAGCCAATGATATATGGCAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGATGTTACCAGATGGTCGAATTGGCTATGTTCTTCAACAACCCGGTGTACAAGTGCCACCTGCCCGACCCCGCAGAAATGATCGGAGCAATGGTCCAAGTGGGCAGCCAGGGCGAGGAGGAGGAGGAGCTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCTTATTAG 1452 0.4332 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAGGKDQLPEAEKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKPDGGYAYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMMLPDGRIGYVLQQPGVQVPPARPRRNDRSNGPSGQPGRGGGGASGNDEGNRSRRYRPY 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02395 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Gma03g02395 483 Gene3D - 269 377 IPR012677 -
Gma03g02395 483 MobiDBLite consensus disorder prediction 1 80 - -
Gma03g02395 483 CDD RRM3_hnRNPR_like 280 358 - -
Gma03g02395 483 MobiDBLite consensus disorder prediction 439 483 - -
Gma03g02395 483 Gene3D - 8 186 IPR012677 -
Gma03g02395 483 SMART rrm1_1 187 264 IPR000504 GO:0003723
Gma03g02395 483 SMART rrm1_1 282 354 IPR000504 GO:0003723
Gma03g02395 483 SMART rrm1_1 107 180 IPR000504 GO:0003723
Gma03g02395 483 CDD RRM_SF 108 180 - -
Gma03g02395 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Gma03g02395 483 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 481 - -
Gma03g02395 483 SUPERFAMILY RNA-binding domain, RBD 275 372 IPR035979 GO:0003676
Gma03g02395 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Gma03g02395 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Gma03g02395 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 349 IPR000504 GO:0003723
Gma03g02395 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 252 IPR000504 GO:0003723
Gma03g02395 483 Gene3D - 187 267 IPR012677 -
Gma03g02395 483 MobiDBLite consensus disorder prediction 49 80 - -
Gma03g02395 483 ProSitePatterns EF-hand calcium-binding domain. 40 52 IPR018247 -
Gma03g02395 483 PANTHER GEO13361P1-RELATED 2 481 - -
Gma03g02395 483 MobiDBLite consensus disorder prediction 8 48 - -
Gma03g02395 483 SUPERFAMILY RNA-binding domain, RBD 103 270 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02395 Gma-Chr3 49042940 49050147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02395 108 457 Eukaryotic Initiation Factors Gene Family AT2G23350 24.416 1.39e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02395 K13161 - gmx:100790907 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02395 03 49042940 49050147 Gma03g02395 03 49042940 49050147 ECH