Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02379 ATGGGAAGAGCTCCTTGTTGCTCTAAAGTAGGGTTGCACAGAGGTCCATGGACTCCTCGAGAAGATGCATTGCTCACCAAGTATATTCAAGCTCATGGAAAAGGCCAGTGGAGATCACTACCAAAAACAGCTGgtcttcttagatgcggaaaaagttgccgactgagatggatgaactatctgagacctgatataaagagaggaaacataaccccagaagaagaTGATCTTATAATTAGAATGCATTCACTTTTAGGAAATAGATGGTCCCTCATCGCGGGAAGATTACCAGGACGAACAGATAATGAGATTAAGAACTACTGGAATACCCATCTCAGTAAGAAGCTGAGAAATCAAGGAACGGATCCAAATACACACGACAAGTTAACTGAGGCACCAGAGAAGAAGAAGGGCAGAAAGAAGAATAAGCAAAAGAGTACTGAGAATAACAAAGGGTCAGAGAAGACCTTAGTTTATCTACCAAAACCAATCAGGGTTAAGGCTTTATCGTCATGTATACCCAGAACGGATAGCACCTTAACCCTTGATTCGAATTCAGCTACGACTGCATCAACAAGCCAAGAGAAAGTTCAAAGCCCAGAAGCAGAAACAAAAGAGGTGAACATGGTTTGGGGGGTAAGTGACAATATTGGAGACAATGGTGGGATTGGAATATTCTTTGGTGAAGACCATGACCTAGTCAACAGTGCCTCTTACATGGAATGCTATTCTGATGATCATGATACGCTAGAAAAGCTCTATGAAGAGTACTTGCAGCTCTTGAATGTTGAGGAGAAACCAGATGAATTAGATTCTTTTGCTCAATCTTTATTGGTGTAA 840 0.3702 MGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGKGQWRSLPKTAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPNTHDKLTEAPEKKKGRKKNKQKSTENNKGSEKTLVYLPKPIRVKALSSCIPRTDSTLTLDSNSATTASTSQEKVQSPEAETKEVNMVWGVSDNIGDNGGIGIFFGEDHDLVNSASYMECYSDDHDTLEKLYEEYLQLLNVEEKPDELDSFAQSLLV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02379 279 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma03g02379 279 CDD SANT 16 61 IPR001005 -
Gma03g02379 279 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 265 - -
Gma03g02379 279 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma03g02379 279 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma03g02379 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma03g02379 279 MobiDBLite consensus disorder prediction 115 156 - -
Gma03g02379 279 MobiDBLite consensus disorder prediction 120 137 - -
Gma03g02379 279 CDD SANT 71 112 IPR001005 -
Gma03g02379 279 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma03g02379 279 Gene3D - 71 155 - -
Gma03g02379 279 Gene3D - 14 66 - -
Gma03g02379 279 PANTHER MYB TRANSCRIPTION FACTOR 1 265 - -
Gma03g02379 279 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma03g02379 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma03g02379 279 SMART sant 13 63 IPR001005 -
Gma03g02379 279 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02379 Gma-Chr3 48911959 48914561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02379 1 149 MYB Transcription Factor Family AT4G38620 63.758 8.87e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma03g02379 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02379 K09422 - gmx:778044 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02379 03 48911959 48914561 Gma03g02379 03 48911959 48914561 ECH
Gma19g02425 19 52735398 52737858 Gma03g02379 03 48911959 48914561 GST
Gma03g02379 03 48911959 48914561 Gma07g00507 07 4790034 4791640 PCT
Gma03g02379 03 48911959 48914561 Gma16g00203 16 2184881 2186262 PCT
Gma07g00507 07 4790034 4791640 Gma03g02379 03 48911959 48914561 PCT
Gma16g00203 16 2184881 2186262 Gma03g02379 03 48911959 48914561 PCT