Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02376 ATGGCAGGTGTGGGAGATGGCGATTTGTACTCGCAACTATGGAAGCTATGCGCGGGACCTTTGGTGGATGTTCCTCGCCAAGGGGAGAGAGTTTTCTACTTCCCGCAGGGTCACATGGAACAATTGCAAGCTTCGACTAATCAGGGACTGAACCAGGAAATTCCTCATTTCAATCTCCCACCCAAGATTCTCTGCCGTGTTGTGCACATTCAGTTGTTGGCGGAACAAGAAACCGATGAAGTTTATGCTCGTGTCACTTTGCTTCCAGAATCCAATCAAGAAGAACCAACGAGTCCAGACCCAAGTCCACCCGAGACCCAGAAACAAGTTTTTCACACTTTTAGTAAGATATTAACTGCTTCTGATACTAGCACACATGGAGGATTTTCAGTTCTGCGGAGGCACGCTACCGAGTGTCTGCCTCAATTGGACATGACCCAAACTACTCCCACTCAGGAATTGGTAGCGGAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTCAGAGgtcaaccaaggaggcacttgcttacaactggctggagtacatttgtcacatccaaaaaactggttgcgggagatgcttttgtgtttttaagGGGAGAGAATGGTGAACTGAGAGTTGGTGTCAGGCGTGTAGCCCGGCAACAGAGTCCCATGCCTTCATCTGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCCTCTCATGCATTTTTGACAAGTACCATGTTTGTGGTTTATTACAAACCTAGGACTAGCCAGTTTATTATTGGTGTAAACAAATATCTGGAGGCAGAAAACAATAAGTTTTCAGTTGGCATGCGTTTTAAGATGAGATTTGAGGTGGAGGACTCACCTGAGAGAAGGTTTTCTGGTACTATTGTCGGGGTTGGGGATGTATCTCCAGGATGGTGGAACTCTCAGTGGCGTTCATTGAAGGTTCAATGGGATGAACCGGCAATAATTCCAAGGCCAGAGAGGGTTTCTTCGTGGGAGATAGAGCCTTTTGCTGCTTCCACTGCTTTGAATGTCACTCAACAACTGGTGAAGAGCAAAAGGTCCAGGACTGAGGTTTCATCTTCTGAAATTGCTCCTAATTCCCCTGCTCTAGCATTCTGGTATCGTGGACCACAAGACCCTACAGCATTAGGTAGCAGTACAGAGGTCCAAAGCAATGAAAATCCAGTTGTATGGTCTACTCGACAGAAAGAAATTAATGGCAATCCTATGAACAGCAGCTCCAAAGTCCGCGTGGAAGGAATGCGGCCTTCTTCCCCACATTCAAAACCAAACCTTTTTATGGACCCCAAAAATTGCAAAGCTGTCCCAGCACAATCAACTGTTTCATCTAGGCCGAAAGATGATTTGGCACATGATCCCATGGAATGTGCTAAAAGGAGTAGTCAGAATCCCATGAATTGTTGGATATTTGGAGTAAATTTGACTAACAATATTACTAACAATGTTACCCTTCCGGATAAAGAACAATTGGGATGTCCCGCTATTATTCCCAGTGGTCCCAAAGATTCTATTCCTGTTGCTGCATGTGAAACTGAGGCTGGTCAGAATCCCTATTATTCACTGTCCAATAAGGAGCACAAGCAAAATATTTCTGATGGATCACCCAGTGCCAGTCAGAGACACACCAGGACTCGGACCAAGGTGCAAATGCAAGGTATTGCTGTTGGTCGTGCAGTTGACCTTACCGTGTTAAAAGATTATGATGATCTCATAGATGAGCTTGAGAAAATGTTTGATATTAAGGGAGAGCTTCAAATGCAAACTAAGTGGGCTATTACTTTTACTGATGATGGAAATGACATGATGCTCGTTGGTGATGATCCATGGCCGGAGTTTTGTACCGTGGTGAAGAGGATTTTCATTTGTTCAAGGGAAGATGTGAAGAAGATGAAAAGCAAGCATTCTTCTTCTTCATCAGTGGGTGAAGAAACTTTGTTGAGCCAAGATTGA 1989 0.4263 MAGVGDGDLYSQLWKLCAGPLVDVPRQGERVFYFPQGHMEQLQASTNQGLNQEIPHFNLPPKILCRVVHIQLLAEQETDEVYARVTLLPESNQEEPTSPDPSPPETQKQVFHTFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQTTPTQELVAEDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKKLVAGDAFVFLRGENGELRVGVRRVARQQSPMPSSVISSQSMHLGVLATASHAFLTSTMFVVYYKPRTSQFIIGVNKYLEAENNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWWNSQWRSLKVQWDEPAIIPRPERVSSWEIEPFAASTALNVTQQLVKSKRSRTEVSSSEIAPNSPALAFWYRGPQDPTALGSSTEVQSNENPVVWSTRQKEINGNPMNSSSKVRVEGMRPSSPHSKPNLFMDPKNCKAVPAQSTVSSRPKDDLAHDPMECAKRSSQNPMNCWIFGVNLTNNITNNVTLPDKEQLGCPAIIPSGPKDSIPVAACETEAGQNPYYSLSNKEHKQNISDGSPSASQRHTRTRTKVQMQGIAVGRAVDLTVLKDYDDLIDELEKMFDIKGELQMQTKWAITFTDDGNDMMLVGDDPWPEFCTVVKRIFICSREDVKKMKSKHSSSSSVGEETLLSQD 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02376 662 Pfam AUX/IAA family 538 592 IPR033389 -
Gma03g02376 662 Pfam AUX/IAA family 600 637 IPR033389 -
Gma03g02376 662 Gene3D - 551 644 - -
Gma03g02376 662 Gene3D - 111 215 IPR015300 -
Gma03g02376 662 MobiDBLite consensus disorder prediction 642 662 - -
Gma03g02376 662 MobiDBLite consensus disorder prediction 410 443 - -
Gma03g02376 662 CDD B3_DNA 114 214 IPR003340 GO:0003677
Gma03g02376 662 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 649 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma03g02376 662 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Gma03g02376 662 SMART B3_2 114 216 IPR003340 GO:0003677
Gma03g02376 662 MobiDBLite consensus disorder prediction 410 425 - -
Gma03g02376 662 ProSiteProfiles PB1 domain profile. 556 637 IPR000270 GO:0005515
Gma03g02376 662 Gene3D - 275 348 - -
Gma03g02376 662 Pfam Auxin response factor 240 319 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma03g02376 662 PANTHER AUXIN RESPONSE FACTOR 11 3 649 - -
Gma03g02376 662 MobiDBLite consensus disorder prediction 538 558 - -
Gma03g02376 662 SUPERFAMILY CAD & PB1 domains 547 632 - -
Gma03g02376 662 Pfam B3 DNA binding domain 114 214 IPR003340 GO:0003677
Gma03g02376 662 SUPERFAMILY DNA-binding pseudobarrel domain 105 243 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02376 Gma-Chr3 48890860 48895272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02376 3 646 B3 DNA Binding Superfamily AT2G46530 56.656 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma03g02376 B3 7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02376 K14486 - gmx:100820503 1289.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02376 03 48890860 48895272 Gma03g02376 03 48890860 48895272 ECH