Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02375 ATGGACCATCAACCTCCACCGTGCCCCGCCGCCGCCTCCGCAACGGACAACCCTCGTGGCGGAACGCGCcaccccatgtaccgcggcgtccgcaagcgccggtggggcaaatgggtctccgaaatccgggagccacggaagaagaaccgcatatggttggggtcgtttccggtgccggagatggcggcacgagcatacgacgtcgcagcctactgcctcaaaggccggaaggcgcagctcaactttcccgacgacgtcgactccctgccgcttccgtcgtcccgcacggcaagagacattcagaccgccgcggcccaggcggcGCGTATGATGAAAGCTTCCGGCAATGATGAGAAAAGCGGCATTGCCTCCGACGACGGCGATAGCGGTTGCGATGATTTTTGGGGCGAGATTGAGTTGCCAGAGCTGATGGACGGCGAGTGCTGCTGGGGTTGTCCGGCCGGCGCTTCCTCCTGGACTTCCTCCGGCGATCTCGCCGAGTGGCCGGAGGAGGAGCTTTCGCCGCAGCAACCGTCGTTTATGGCATGTCTATAA 555 0.3351 MDHQPPPCPAAASATDNPRGGTRHPMYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDDVDSLPLPSSRTARDIQTAAAQAARMMKASGNDEKSGIASDDGDSGCDDFWGEIELPELMDGECCWGCPAGASSWTSSGDLAEWPEEELSPQQPSFMACL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02375 184 MobiDBLite consensus disorder prediction 1 24 - -
Gma03g02375 184 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 184 - -
Gma03g02375 184 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Gma03g02375 184 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Gma03g02375 184 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Gma03g02375 184 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Gma03g02375 184 MobiDBLite consensus disorder prediction 161 184 - -
Gma03g02375 184 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Gma03g02375 184 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Gma03g02375 184 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Gma03g02375 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 184 - -
Gma03g02375 184 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02375 Gma-Chr3 48872285 48872839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02375 10 184 AP2-EREBP Transcription Factor Family AT1G01250 54.497 6.32e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma03g02375 AP2 5.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02375 K09286 - gmx:100819971 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02375 03 48872285 48872839 Gma03g02375 03 48872285 48872839 ECH
Gma19g02419 19 52682584 52683273 Gma03g02375 03 48872285 48872839 GST
Gma03g02375 03 48872285 48872839 Gma07g00514 07 4918365 4919238 PCT
Gma03g02375 03 48872285 48872839 Gma16g00213 16 2307728 2308635 PCT
Gma07g00514 07 4918365 4919238 Gma03g02375 03 48872285 48872839 PCT
Gma16g00213 16 2307728 2308635 Gma03g02375 03 48872285 48872839 PCT