Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02374 atgcggaagctggtgctgcagaagctgcacaccacgttcggGGGCGAGGATGATGACAATTACGCTTTTGGCCTCGACCACGTCACCGACACCGAGATGTTCTTTCTGGCTTCCATGTACTTCTCATTCCCTCGCGGCCATGGTGCCCCAGGTAAGTGCTTCGCCTCCGGGAACCATTTCTGGCTCAAATCTGTCTCTGTGTCTGATCACTGCGTGCGTTCTTCCTTGGCTAACTCTGCGGGAATTCAGACTATTGTTTTGGTACCTACTGATTTGGGAGTCGTGGAGTTGGGTTCTGTCAGAATGTTACCCGAGAGTTTTGAACTCTTGCAGGCTGTTAAATCTGTGTTCTCCACGCCGATTCCCAAGGTTTTGGTGAACACAATTCGCAATCAGACACATTTTAGAGAGAAACTTGCTGTTAGAAAAATGGAGGATAATAGGCCTTGGAACAACAACAACGTTAGTTTTCCGAATGTGCGGAGCAATGGCCTTCATGTTTCAAGTTGTTGGCCAGTGAATTCGGGTTTGAGGCAGCCTGCTCCTAGGGTGGTGGCGGAGCTGGCTAATGGTGTGAGACAGGATTTGAGGCTGAGCAATAGCTATGAACCTCAAAGACAGGTGCAAATGCAAATTGACTTTAGCGGAGGCACTAGCAGGCCTTCTGATGTGGAGGCCTCTTGCAAGGAGGAGCAACCAAGTGTTGCCGATGAAAGGAAGCCCAGGAAGCGGGGAAGGAAGCCCGCCAATGGAAGGGAAGAGCCCCTCAATCATGTGGAGGCCGAGAGGCAAAGGCGCGAGAAGCTCAACCAGCGCTTCTATGCGTTGAGATCTGTGGTGCCCAACATCTCCAAGATGGACAAGGCCTCATTGTTGGGAGACACCATTGCTTATATCAATGAGCTCCAGGCTAAAGTCAAGATCATGGAAGCCGAAAGAGAGAGATTTGAAAGCATTTCAAATCAGGAGAAAGAAGCTCCTGCTGATGTGGATATTCAAGCTGTTCAGGATGATGAGGTCATTGTAAGGGTGAGCTGCCCTCTTGACAATCATCCTCTTTCAAAAGTAATCCAAACATTCAACCAAACACAGATCAGTGTTGTAGAGTCTAAACTTGCTTCTGCAAATGATGCTATTTTTCACACATTTGTAATTAAGTCCCAAGGATCTGAACAGCTCACAAAGGACAAGTTGATTGCTGTTTTTTCTCCAACGGAATCCAACTCATTGCAGCCATTGTCATCAGTTGGATGGTAA 1257 0.4614 MRKLVLQKLHTTFGGEDDDNYAFGLDHVTDTEMFFLASMYFSFPRGHGAPGKCFASGNHFWLKSVSVSDHCVRSSLANSAGIQTIVLVPTDLGVVELGSVRMLPESFELLQAVKSVFSTPIPKVLVNTIRNQTHFREKLAVRKMEDNRPWNNNNVSFPNVRSNGLHVSSCWPVNSGLRQPAPRVVAELANGVRQDLRLSNSYEPQRQVQMQIDFSGGTSRPSDVEASCKEEQPSVADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDTIAYINELQAKVKIMEAERERFESISNQEKEAPADVDIQAVQDDEVIVRVSCPLDNHPLSKVIQTFNQTQISVVESKLASANDAIFHTFVIKSQGSEQLTKDKLIAVFSPTESNSLQPLSSVGW 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02374 418 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 2 117 IPR025610 -
Gma03g02374 418 MobiDBLite consensus disorder prediction 224 264 - -
Gma03g02374 418 Coils Coil 299 319 - -
Gma03g02374 418 PANTHER MYC 121 404 IPR045084 GO:0003700|GO:0006355
Gma03g02374 418 PANTHER MYC 1 119 IPR045084 GO:0003700|GO:0006355
Gma03g02374 418 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 119 - -
Gma03g02374 418 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 121 404 - -
Gma03g02374 418 SMART finulus 259 308 IPR011598 GO:0046983
Gma03g02374 418 MobiDBLite consensus disorder prediction 214 264 - -
Gma03g02374 418 Gene3D - 246 318 IPR036638 GO:0046983
Gma03g02374 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 253 302 IPR011598 GO:0046983
Gma03g02374 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 252 318 IPR036638 GO:0046983
Gma03g02374 418 Pfam Helix-loop-helix DNA-binding domain 257 303 IPR011598 GO:0046983
Gma03g02374 418 CDD bHLH_AtAIB_like 250 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02374 Gma-Chr3 48860531 48861949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02374 1 417 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 47.609 3.01e-128 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g02374 bHLH-MYC_N 6.8e-33 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02374 - - gmx:100819439 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02374 03 48860531 48861949 Gma03g02374 03 48860531 48861949 ECH
Gma19g02418 19 52666677 52669073 Gma03g02374 03 48860531 48861949 GST
Gma03g02374 03 48860531 48861949 Gma07g00515 07 4947616 4949038 PCT
Gma03g02374 03 48860531 48861949 Gma16g00214 16 2329955 2331693 PCT
Gma07g00515 07 4947616 4949038 Gma03g02374 03 48860531 48861949 PCT
Gma16g00214 16 2329955 2331693 Gma03g02374 03 48860531 48861949 PCT