Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02369 ATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCATCATCAGTTTTCTTCAATCTCCAAGCTTCATAACAGTGGCCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTTTGCACCAACTCTATGTACCCTCCTATCCATCAGTGCCACAACGGTCACACACTTTGCTCAACTTGCAAGACAAGGGTACACAATCGATGCCCAACTTGCCGGCAGGAACTCGGTGATATAAGGTGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATTTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTTAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTATGCCGGGTCAGACTGCTCGGTGGTTGGGGATATTCCATGCCTTGTCGCTCATTTAAGGGACGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCCAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTGGGCATGGCTCCAGTTTACATGGCATTCCTCCGATTCATGGGTGATGAAAGAGAGGCGCGGAACTACAGCTACAGCTTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAGGTAAGAGACAGCCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCGGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTGTGTAGCTAG 936 0.469 MESSSIESSTVSSMTMMEEDEHPHHQFSSISKLHNSGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02369 311 SUPERFAMILY RING/U-box 35 88 - -
Gma03g02369 311 Pfam Seven in absentia protein family 91 290 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gma03g02369 311 MobiDBLite consensus disorder prediction 1 16 - -
Gma03g02369 311 PANTHER UBIQUITIN LIGASE SINAT3 1 303 - -
Gma03g02369 311 ProSiteProfiles Zinc finger RING-type profile. 49 85 IPR001841 -
Gma03g02369 311 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 163 290 IPR008974 GO:0005515
Gma03g02369 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Gma03g02369 311 ProSiteProfiles Zinc finger SIAH-type profile. 102 162 IPR013010 GO:0008270
Gma03g02369 311 MobiDBLite consensus disorder prediction 1 31 - -
Gma03g02369 311 CDD Sina 163 291 - -
Gma03g02369 311 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 303 - -
Gma03g02369 311 CDD RING-HC_SIAHs 47 85 - -
Gma03g02369 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 157 IPR013083 -
Gma03g02369 311 SUPERFAMILY TRAF domain-like 102 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02369 Gma-Chr3 48819566 48826809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02369 1 297 C3H Transcription Factor Family AT2G41980 72.483 9.39e-162 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02369 K04506 - gmx:100782764 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02369 03 48819566 48826809 Gma03g02369 03 48819566 48826809 ECH
Gma19g02413 19 52627122 52630847 Gma03g02369 03 48819566 48826809 GST