Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02366 ATGGTCTTCGAGTTTTTGGAATCATCACATTATCCATTGTGGGACCAGCTATCATCTTTGCCGCTGCAATGGCATGCTACGCGTCCCTCAAGTACAGAAGAGGCAATACAACCAGAATTGCTGCTGCAGAGGTCGGAACCAAGTGCAATATCACCCCAACCTTCCATTGCTACGATGGTGGGCTTGGATGAGTCTACAATCGAGTCTTATCAGAAACTTGTACTAGGGGAAAGCCGACGAGTGCCAGGACCCAATGACGGATGTTGCACCATATGTTTGTCAGAGTATAAAACCAAAGACACAATCAGATGCATTCCTGAATGTGCGCATTGCTTCCATGCCGAATGCATAGATGAATGGCTTAGCATGAACAGCACATGCCCCCTTTGCCGCAACTCCCCCTCCCATTCTTCCACTGTTCAAGTTATGGCCAGTGACCCTTGA 444 0.482 MVFEFLESSHYPLWDQLSSLPLQWHATRPSSTEEAIQPELLLQRSEPSAISPQPSIATMVGLDESTIESYQKLVLGESRRVPGPNDGCCTICLSEYKTKDTIRCIPECAHCFHAECIDEWLSMNSTCPLCRNSPSHSSTVQVMASDP 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02366 147 Pfam Ring finger domain 89 131 IPR001841 -
Gma03g02366 147 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Gma03g02366 147 SUPERFAMILY RING/U-box 81 134 - -
Gma03g02366 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 136 IPR013083 -
Gma03g02366 147 SMART ring_2 89 130 IPR001841 -
Gma03g02366 147 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 49 139 - -
Gma03g02366 147 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 49 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02366 Gma-Chr3 48799544 48799987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02366 52 137 C3H Transcription Factor Family AT5G07040 56.977 8.93e-36 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02366 - - ccaj:109796544 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02366 03 48799544 48799987 Gma03g02366 03 48799544 48799987 ECH
Gma19g02408 19 52606419 52608358 Gma03g02366 03 48799544 48799987 GST
Gma03g02366 03 48799544 48799987 Gma07g00524 07 5044303 5046809 PCT
Gma03g02366 03 48799544 48799987 Gma16g00225 16 2430646 2437724 PCT
Gma07g00524 07 5044303 5046809 Gma03g02366 03 48799544 48799987 PCT
Gma16g00225 16 2430646 2437724 Gma03g02366 03 48799544 48799987 PCT