Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02362 ATGAATGCAAAGGGACATAAATTTGTGAGGTTTGAGGACTGGAAATCAGAGTCATCTTTTAGTCCAGAGCAAGAAAATTCTATTAACAATGGGAATCACAAAAGAAGACCTAGTGTGGGTGCGGTTTTGAAGAGTATAGGAAGAAGGCTGGAGAGTGTGTCAGAGAAGATGAAGAACTTGACAAGAGCTTCAGCTGTCCATCCTGTAAGTGATGGAAAGAAAAAGCTTCCTCCTAGGAAGAAAATTCTTGATCCACAGGGTCCAATCCTTCAGAAATGGAACAAAATCTTTGTAATAACGTGTGTGATGGCAGTCTCTGTGGATCCTCTCTTCTTTTACATTCCGGTGATAAATAATGCTAGAAAACGTGTTGATTTGGATGGAGTATTGCAGATCACTGCCAGTGTTCTTCGCACCTTCTTTGATCTATTCTACATTCTTCGCATAATCTTCCAGTTTAAGACAGGATTCATTGCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGAGCTCATTGATGATCCTATGGCTATAATGAAAAGATACTTAACTTCACACTTCATCATTGATGTTCTATCAATTATTCCACTTCCACAGGTGATTCTTTTAGCCATAAATCGAAACCTGAAAACATCAGATCCATTTGTAGCAAAGGATTTGTTGAAGTATTCAGTATTAATCCAGTATGTGCCAAGGCTTTTGCGGATCTATCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACCGAGACAGCATGGGCTGGAGCTGCTTCTAATCTTTTTCTCTATATGCTGGCAAGTCATGTGGTTGGAGCTAACTGGTATATGCTTTCGGTAGAGTCAGAGGTGCGGTGCTGGCGAGAGTTAAAGAATGCTTCACTCTGTCATCGAGAATACATGAGTTGTGGAGACCGCAATCAAAAAAACTTTACACTTCTCAATCTTCTTAATCAGACACTATTGAATCAAACAGTTCTTAATCAAACTTGTTCTTTGGTTGACCCTGATACAATCAAAGACCCAAAAACCTTCAATTTTGGAATATTTTCTGATGCTCTAGATTCACATGTGGTAGAATCAACAACAGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAATCTCAAGACTAGTACTGATGTCTCAGAAATAGCCTTTGCAATCTTCATTGCCATCTTTGGATTGGTCTTATTCTCGTTACTTATTGGAAACATGCAGAAATATCTGCAATCTACAACTGTTAGAGTGGAGGAGATGAGAGTGAAGAGACAGGACGCGGAACAGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAAGGAAAGAATTAGAAAGTACGAACAGTACCAATGGCAAGAAAATAAGGGTGTTGAGGAGGAGGCATTAATTCGTAACCTTCCTAAAGATCTCCGAAGGGACATAAAGCGTCACCTTTGCTTAGCTTTAGTTAAAAAAGTGCCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGCGATAGACTGAAGCCAGTCCTTTACACTGAGAAGAGCTACATTGTTCGTGAAGAAGATCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAGGTTTCTACTATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCATGTTCCTCATGGCTGGTGACTTTTGTGGAGAGGAACTTCTGACATGGGCCTTGGATCCCAACTCCTCCTCAAATCTACCCATTTCAACTAGGACAGTAGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGGCCGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGCCTTCACAGCAAACAGCTCCAACACGCTTTCAGGTTCTATTCCTCACAGTGGAAGACATGGGCTGCTACTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGATTGAGAGGTCATTGTGCAAAGCAGAAGCAGACCTACAAGATGCTTTGGCAAATGAGGAAGGGTCTAGTCTAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGTCAATGCACTGCGAAACTTGAGAGAAAATAGCAGACACAATACAATGCAGCAGAGACTACTATCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACTGCTCAGAAACACTAA 2187 0.412 MNAKGHKFVRFEDWKSESSFSPEQENSINNGNHKRRPSVGAVLKSIGRRLESVSEKMKNLTRASAVHPVSDGKKKLPPRKKILDPQGPILQKWNKIFVITCVMAVSVDPLFFYIPVINNARKRVDLDGVLQITASVLRTFFDLFYILRIIFQFKTGFIAPSSRVFGRGELIDDPMAIMKRYLTSHFIIDVLSIIPLPQVILLAINRNLKTSDPFVAKDLLKYSVLIQYVPRLLRIYPLFKEVTRTSGILTETAWAGAASNLFLYMLASHVVGANWYMLSVESEVRCWRELKNASLCHREYMSCGDRNQKNFTLLNLLNQTLLNQTVLNQTCSLVDPDTIKDPKTFNFGIFSDALDSHVVESTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTDVSEIAFAIFIAIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLKERIRKYEQYQWQENKGVEEEALIRNLPKDLRRDIKRHLCLALVKKVPMFEKMDEQLLDAMCDRLKPVLYTEKSYIVREEDPVDEMLFIMRGKVSTMTTNGGRTGFFNSMFLMAGDFCGEELLTWALDPNSSSNLPISTRTVETISEVEAFALMADDLKFVASQFRRLHSKQLQHAFRFYSSQWKTWAATFIQAAWRRYWKKKIERSLCKAEADLQDALANEEGSSLSLGATIYASRFAVNALRNLRENSRHNTMQQRLLSLLPPKPAEPDFTAQKH 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02362 728 MobiDBLite consensus disorder prediction 15 38 - -
Gma03g02362 728 CDD CAP_ED 500 631 IPR000595 -
Gma03g02362 728 Pfam Ion transport protein 93 428 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gma03g02362 728 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 726 - -
Gma03g02362 728 ProSiteProfiles cAMP/cGMP binding motif profile. 500 584 IPR000595 -
Gma03g02362 728 SUPERFAMILY cAMP-binding domain-like 429 625 IPR018490 -
Gma03g02362 728 MobiDBLite consensus disorder prediction 20 34 - -
Gma03g02362 728 Gene3D - 95 424 - -
Gma03g02362 728 SMART cnmp_10 500 631 IPR000595 -
Gma03g02362 728 Coils Coil 43 63 - -
Gma03g02362 728 Gene3D Jelly Rolls 498 618 IPR014710 -
Gma03g02362 728 SUPERFAMILY Voltage-gated potassium channels 84 422 - -
Gma03g02362 728 Gene3D Helix hairpin bin 427 491 - -
Gma03g02362 728 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02362 Gma-Chr3 48781642 48786026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02362 1 725 Ion Channels AT5G53130 63.388 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02362 K05391 - gmx:100816236 1418.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02362 03 48781642 48786026 Gma03g02362 03 48781642 48786026 ECH
Gma19g02406 19 52596643 52600693 Gma03g02362 03 48781642 48786026 GST
Gma03g02362 03 48781642 48786026 Gma16g00228 16 2446341 2457699 PCT
Gma16g00228 16 2446341 2457699 Gma03g02362 03 48781642 48786026 PCT