Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02346 ATGTATCATTCACTTCACTTCATGGAAGCTAGATTCAGTGAGCGGAAGGTTGTCACTTACAAACATGTCAAACCTGGTGACATTTTGAATGCAGCACCAAAGGTAGTTCGGATTTCTGTGATGGATCCCTATGCCACAGATGACGAAGATGAAGATGAAGGGTTGGTTATTCATCCAAGAATGAAGAAGTTTGTGAATGAAATCAGAATTGTGGAGAAGAGTTCAACTAACTGTGAGTCTGCAGGTGTAAATCGTACTAGTAATGTGTCGCTGAGACAGCATTACAAGGGAAAAACTGGAGATAGTCTTGAaaaaaagaggcttagaggagttcgtcaaaggccatggggaagatgggcagcagaaatcagagatcctgtgaagcgaataagggtgtggttagggacttatgacactgctgaagaagctgctatggtttatgacaaagcagccattgcctTTAGAGGCTCTAAAGCTCTCACTAATTTCATCAAGCCTCCTACAAGGGAAGATCTTTGTGATTGTGGCCCTAATGAAACTGAGGCTAGTGTGGCTGTGAGTGGTGAGAATGATTCAAGTGAAGAGTCTCATTTGTCTTCACCTACTTCTGTGCTTGGACTTCAATCTGTGGAACTTATGTTGGATGAGGTTTCTGAAACAGATCTTCCAAGCAAAGAAGAGTCAAGTTCTCAAGACAGCTTCTTGTTTTTAGATTCACATTCACCGTCCATTGATTGTTATTTCAATTTTGAAACTCTTCCACCAGTGTTTCTTCATGAAACTAGCATAACACAGCAGCCTGATTTCCATGACAAATTCAGTGACATTTCCCATCTTGTCAATGAGGATTTTCAATCATGGAATTGGGATATAGATAGTTACTTCAGTGATCCTTTGTTGATCTGA 906 0.3333 MYHSLHFMEARFSERKVVTYKHVKPGDILNAAPKVVRISVMDPYATDDEDEDEGLVIHPRMKKFVNEIRIVEKSSTNCESAGVNRTSNVSLRQHYKGKTGDSLEKKRLRGVRQRPWGRWAAEIRDPVKRIRVWLGTYDTAEEAAMVYDKAAIAFRGSKALTNFIKPPTREDLCDCGPNETEASVAVSGENDSSEESHLSSPTSVLGLQSVELMLDEVSETDLPSKEESSSQDSFLFLDSHSPSIDCYFNFETLPPVFLHETSITQQPDFHDKFSDISHLVNEDFQSWNWDIDSYFSDPLLI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02346 301 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 8 297 - -
Gma03g02346 301 CDD AP2 106 163 IPR001471 GO:0003700|GO:0006355
Gma03g02346 301 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Gma03g02346 301 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Gma03g02346 301 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Gma03g02346 301 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Gma03g02346 301 SUPERFAMILY DNA-binding domain 108 163 IPR016177 GO:0003677
Gma03g02346 301 MobiDBLite consensus disorder prediction 183 202 - -
Gma03g02346 301 Pfam AP2 domain 108 156 IPR001471 GO:0003700|GO:0006355
Gma03g02346 301 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 297 - -
Gma03g02346 301 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02346 Gma-Chr3 48656213 48657118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02346 6 301 AP2-EREBP Transcription Factor Family AT4G27950 34.718 9.68e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma03g02346 AP2 4.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02346 - - gmx:100814120 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02346 03 48656213 48657118 Gma03g02346 03 48656213 48657118 ECH
Gma19g02386 19 52439820 52440701 Gma03g02346 03 48656213 48657118 GST