Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02313 ATGGAAAGAGGGTTGCTTCTTTTGTTGTTCTTGTTGTTGGTTATGGTGCTTTCTGTTTGTGGCAACGATGTGGAATATTCACAGTGCAATTGTGACGAGGAAGGGCTTTGGAGCATCCACAACGTGCTGGTTTGTCAGAAAGTGAGTGACTTTTTCATTGCCATTGCATATTTTTCCATACCCCTTGAGCTTCTTTACTTTGTGAGCTGCTCTAATGTCCCCTTTAAATTGGTCTTCCTACAATTCATTGCCTTCATAGTTCTCTGTGGATTGACCCATTTGCTCAATGCCTATACTTACTATGGCCCACACTCCTTCCAGTTGTTTCTTTCCCTCACTGTTGCTAAGTTCCTCACTGCTCTTGTTTCTTGTGCCACTGCAATTTCCTTTCCCACACTCATTCCTCTTCTGCTGAAAATCAAAGTGAGGGAGCTATTTTTGAGGCAGAATGTGTTAGAATTGGGCCAGGAGGTTGGGATGATGAAGAAACAGAAGGAAGCTAGTTGGCATGTTAGGATGCTCACTTGTGAGATTAGGAAATCTCTGGATAAGCATACCATCTTGTATATCACACTTGTTGAGCTTTCCAAGGCATTGGATTTGCACAATTGTGCAGTATGGATGCCTGATGAGGATAGGAGAGAAATGCATTTGACTCATGAGTTGAAACCAAACTCAACAAGGATttttcacaattctattcctataagtgatcctgatgtgttggacataaagaagagccaaggggtgtggattttgaggcctgattctgcactaggagctgcaagtagtggtggTGGTGGATCTGGAGATTCTGGTGCTGTGGCTGCCATTCGCATGCCAATACTTCATGTTTCGAATTTCAAAGGAGGCACACCAGAGTTTGTTGAAACATCTTATGGTGTACTGGTTTTGGTTCTTCCAaattcagactccagggcttggacctctcatgaaatggagatagtgaaagttgttgctgaccaggtggctgtggcattgtctcatgcgtctgttcttgaagagtctcagcttatgagccagaaacttgcagagcaaaaccgggcgttgcaacaggctcaaaagaatgcaatgatggccaggaaggcaaggagctcgtttgagaaagttatgagtcatggaatgcggagacctatgcattcaatcctgggcttgctttcaatgtttcaagaggataatataagacctgaacagaagattgttattgattcaattttgaaagttagcaatgcactatcacgattgattaatgatgtgatggagattgcggcaaatgacaatggaagcttccagttagagatgaaacctttccatctacattcaatgatgagggaagcttcttgcactgccaagtgtttgtgtatatataaaggctttggtcttgaagttgatgttgacaagtctttgcctgatctggtcattggtgatgaggcaaggactttccaagtaattttacatatgattggctatttattgaacatatatgataaagggaatctcatttttcaagtttatcttaaaagtgatagtggagatagagatgacagaagttttggattatggagatcgagcatgcaaaatgagtatgtacatattaaatttaattttcagataaatggtataagttcccagtcagatgaatcagtttcaacaagaaattatactggtagaaggcactacaacaatgaacctaaggaaggcctgagcttcagcatgtgcaaaacgctggtgcagatgatgcaaggtaatatttggatatcaactaactctctgggtttggcacaaggaatgacgcttcttctcaagtttcagataggatcatcccatggaagattcactcttgctcctacagatttttcaaactctcagtttagagggcttaaggttgtgttggctgatgatgatgatgtaaacaggactgtgaccaagaagctgcttgagaaactggggtgtcaagtaactgctgtttcatcaggattcgaatgtcttggtgctataagtggctctggtaactcattcaaaattattctgttggatcttcacatgcctgaaatggatggttttgaagttgcaagaaggattcggaaattccaaagccataattggcccttgatcatagcttttactgcaagtgcagaagaacacatcaaggagagatgtctacaggtgggaatgaatggattgattcgaaaacctatcctccttcgtgagatAGCAGATGAACTTGGAACAGTCTTGCAACGTGCAGGAACTAACAAGTTTCGTTGTGGGCAAAGTAAGTGGTGA 2307 0.1651 MERGLLLLLFLLLVMVLSVCGNDVEYSQCNCDEEGLWSIHNVLVCQKVSDFFIAIAYFSIPLELLYFVSCSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGPHSFQLFLSLTVAKFLTALVSCATAISFPTLIPLLLKIKVRELFLRQNVLELGQEVGMMKKQKEASWHVRMLTCEIRKSLDKHTILYITLVELSKALDLHNCAVWMPDEDRREMHLTHELKPNSTRIFHNSIPISDPDVLDIKKSQGVWILRPDSALGAASSGGGGSGDSGAVAAIRMPILHVSNFKGGTPEFVETSYGVLVLVLPNSDSRAWTSHEMEIVKVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMARKARSSFEKVMSHGMRRPMHSILGLLSMFQEDNIRPEQKIVIDSILKVSNALSRLINDVMEIAANDNGSFQLEMKPFHLHSMMREASCTAKCLCIYKGFGLEVDVDKSLPDLVIGDEARTFQVILHMIGYLLNIYDKGNLIFQVYLKSDSGDRDDRSFGLWRSSMQNEYVHIKFNFQINGISSQSDESVSTRNYTGRRHYNNEPKEGLSFSMCKTLVQMMQGNIWISTNSLGLAQGMTLLLKFQIGSSHGRFTLAPTDFSNSQFRGLKVVLADDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAISGSGNSFKIILLDLHMPEMDGFEVARRIRKFQSHNWPLIIAFTASAEEHIKERCLQVGMNGLIRKPILLREIADELGTVLQRAGTNKFRCGQSKW 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02313 768 Gene3D - 634 762 - -
Gma03g02313 768 ProSiteProfiles Histidine kinase domain profile. 377 614 IPR005467 -
Gma03g02313 768 Pfam His Kinase A (phospho-acceptor) domain 371 435 IPR003661 GO:0000155|GO:0007165
Gma03g02313 768 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 439 596 IPR036890 -
Gma03g02313 768 Pfam GAF domain 185 334 IPR003018 GO:0005515
Gma03g02313 768 PANTHER ETHYLENE RECEPTOR 5 754 - -
Gma03g02313 768 PIRSF Ethylen_sen_hybr_HK 1 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Gma03g02313 768 Coils Coil 340 370 - -
Gma03g02313 768 Gene3D - 167 334 IPR029016 -
Gma03g02313 768 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 355 435 IPR036097 GO:0000155|GO:0007165
Gma03g02313 768 Pfam Response regulator receiver domain 636 746 IPR001789 GO:0000160
Gma03g02313 768 CDD REC_ETR-like 634 749 - -
Gma03g02313 768 CDD HATPase_ETR2_ERS2-EIN4-like 476 608 - -
Gma03g02313 768 SMART REC_2 634 749 IPR001789 GO:0000160
Gma03g02313 768 Gene3D - 434 614 IPR036890 -
Gma03g02313 768 SMART HisKA_10 370 435 IPR003661 GO:0000155|GO:0007165
Gma03g02313 768 SUPERFAMILY CheY-like 630 755 IPR011006 -
Gma03g02313 768 SMART gaf_1 183 344 IPR003018 GO:0005515
Gma03g02313 768 PANTHER TWO-COMPONENT HISTIDINE KINASE 5 754 - -
Gma03g02313 768 ProSiteProfiles Response regulatory domain profile. 635 753 IPR001789 GO:0000160
Gma03g02313 768 CDD HisKA 369 430 IPR003661 GO:0000155|GO:0007165
Gma03g02313 768 Gene3D - 335 433 - -
Gma03g02313 768 SUPERFAMILY GAF domain-like 186 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02313 Gma-Chr3 48335115 48340076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02313 23 756 Miscellaneous Gene Families AT3G04580 61.477 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma03g02313 GAF 6.1e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02313 K14509 - gmx:100805023 1459.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02350 19 52103625 52107424 Gma03g02313 03 48335115 48340076 ECH
Gma03g02313 03 48335115 48340076 Gma03g02313 03 48335115 48340076 ECH
Gma19g02350 19 52103625 52107424 Gma03g02313 03 48335115 48340076 GST