Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02312 ATGAAAGCTGGGCGAGTAGTAATGGAGTTGTTTGTTGATGCAACCCCAAAAACAGCTGAAAACTTCAGGGCCCTCTGCACTGGGGAAATGGGGATTGGAAAATCTGGGAAACCTTTACATTACAAAGGTTCTGCATTTCATCGTATTATTCCAGAGTTTATGTGTCAGGGAGGAGATTTTACAAAAGGGAATGGAACAGGGGGTGAGTCAATCTACGGTTCCAAATTCAATGATGAGAATTTCAATTTGAGGCATACTGGTCCTGGTATTCTCTCCATGGCAAATGCTGGACCCCATACTAATGGTTCTCAGTTCTTCATATGTACTGCAAAGACACCATGGCTTGATGGGAAACATGTTGTGTTTGGAAAAGTTGTTGATGGATACAGCGTTGTGGAGGAGATGGAGAAAGTGGGTTCAGGAAGTGGCAGGACATCTGAACCGGTGCTTAGAGAAGCCGAGGAGTTGGAAGGAGGCCGTGGGGGAAGTTCGCGGTTTGGTTGGGAACCTTGGGAGCAGTACGGTAAAAACAAGGATGTGATGGTGTTGGACTTGGAGGAGGACTTAGGAGTAGACTATTTGGAACACTTCTTACGCGCAAAAAGGCAATTGGTTTGTAGGATACAGCAAAGATTCTTTTTGCCTCTGGTAGACGTGGACAGCAATGGCATAATAGCAAGGTTGTGGCCTTGTGGGTCGCCAGGTGCTTCATGA 714 0.4608 MKAGRVVMELFVDATPKTAENFRALCTGEMGIGKSGKPLHYKGSAFHRIIPEFMCQGGDFTKGNGTGGESIYGSKFNDENFNLRHTGPGILSMANAGPHTNGSQFFICTAKTPWLDGKHVVFGKVVDGYSVVEEMEKVGSGSGRTSEPVLREAEELEGGRGGSSRFGWEPWEQYGKNKDVMVLDLEEDLGVDYLEHFLRAKRQLVCRIQQRFFLPLVDVDSNGIIARLWPCGSPGAS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02312 237 SUPERFAMILY Cyclophilin-like 2 150 IPR029000 -
Gma03g02312 237 Gene3D - 1 157 IPR029000 -
Gma03g02312 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
Gma03g02312 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 10 25 IPR002130 GO:0000413|GO:0003755
Gma03g02312 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 46 58 IPR002130 GO:0000413|GO:0003755
Gma03g02312 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 116 IPR002130 GO:0000413|GO:0003755
Gma03g02312 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 89 104 IPR002130 GO:0000413|GO:0003755
Gma03g02312 237 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 4 149 - -
Gma03g02312 237 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 148 IPR002130 GO:0000413|GO:0003755
Gma03g02312 237 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 4 149 - -
Gma03g02312 237 CDD cyclophilin_ABH_like 2 149 - -
Gma03g02312 237 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 41 58 IPR020892 GO:0003755|GO:0006457
Gma03g02312 237 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 148 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02312 Gma-Chr3 48329042 48335068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02312 4 138 U-box Gene Family AT5G67530 50.000 1.49e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02312 K01802 - gmx:100809134 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02312 03 48329042 48335068 Gma03g02312 03 48329042 48335068 ECH