Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02296 ATGGCCCCTAATCCAAGAGTTAATAAGGCCTTTAGCTTTATGAAGGCCTTAGGAATTTCTGATAAGGATGTGAAGCCAGTGTTGATAAAGCTGTTCCGAGTTTATGAAGGAAACTGGGAACTTATTGAAGATGACAATTACCACACACTTGTAGATGCATACTTTGATTTTGAGAAACACAAGGGAGTCGAAGGTGAGAGAAAAGCTAATGACAGTTGTCATGGTGGAGAAAAACCAAAACGGGGACCGCTTTTGGTAGATGATGATGATGACGACAAGGATTTGCAAACAATGGACAGTTCAAGTCAAATGTTAAGTGCAGAAGACAATAAAATATCACCAAAGACATTTGAACAGAAAATCATTGAGCCATCTCAAACATTCATGAAAGATATTAAGCCCAAAACCAGTTCACAAGCATCACATACAATGTTGAGTGAGGTAGAAAAGATCTCAAATTTACCTCGTGTGGCAGCTAAAGATAGAAAATCATACCCTGAGAATGCATCATCTGCAGTTGAGAAAGTGCTAGTGAAGCCAAGAACTAAGAAACTCAAGATGCAACTTGCTTCAACGAATCATATTGGTTTACCTGATGCGTCGGATGAAAAACTGTGTCTCAAACCTCTGTCAACTCAGGATCAGGATATGGAAAGTAAAGATGATGTTATATCCGCCTGCGACCGTAATACCCCAGCTTATAATGGAAATATTACGATTGCTAGTTCTTCACGTCTGGGAGAAGTAAAAATATCTTTGAATTGTGACTCTGCGTTGGGACAACCAAACTTCAGTATTCCTAATTTGGATATTGTTATGAAGTTCATGGACAAGAAGTACATTCGCTCTTGCAACACTGTTGAGCCTCAATTTTCTATGGCAAAGCTATTGGATGACCTTTGCAGGATTTATCTCAAGTTGGGATATCGAAAGGGATCAAATTCCAAGCGTGCCAATTTACAGCAATATGTTAATCAAGGTGAAAGGAATCCCTTTCGTTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAAACTGGCAGTGAAGACTTGCCAAAGTTTAATTACATACCATGTAATATAACTTATCAAAGTGCTAATGTAAATATTTCTTTGGCTCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCAACTGTCTTTCCTCACCATTGCCTTGTGCATGTGCTCAGGAAACTGGTGGAGAGTTTGCTTACACTCCTCATGGTTTGTTGAAAGAAGAATTTTTAACAGCTTGTGTATCTATGAAGAATGAACCTCAAGACCATCATTATGTGTACTGTCAAGAGTGCCCTTTGGAGAAGTCCAAGAATGAGTACATGCCCGAACGATGCAAGGGCCATATGGTTAGAAAATTTATAAAGGAATGTTGGAGAAAATGTGGATGTGACATGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGGTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGATTTACCAAAAGGAACTTTTGTATGTGAATATGTAGGAGAAATATTAACCAATATGGAGTTATATGAGAGGATTATGCAGGATACTGGCAACGAGAGACATACATATCCTGTAACTCTTGATGCGGACTGGGGCTCAGAACAGGGGTTAAAGGACGAGGAGGCACTATGTTTAGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAGATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCATCTTGCCTTCTTCACCAACAGGACAGTGAGTGCAAATGAGGAGTTGACATGGGATTATGGTATTGATTTTGATGATCACGACCATCCTATTAAAGCATTTCGGTGTTGTTGTGGAAGCGTCTTTTGCTGTGATAAGAAACAAAAAGGAAAAGGAAAAATAGAAAATCAGATTAATGTAACAAGAGGGATGTCTGAACTCAAACAATTGGAGTAA 2034 0.3904 MAPNPRVNKAFSFMKALGISDKDVKPVLIKLFRVYEGNWELIEDDNYHTLVDAYFDFEKHKGVEGERKANDSCHGGEKPKRGPLLVDDDDDDKDLQTMDSSSQMLSAEDNKISPKTFEQKIIEPSQTFMKDIKPKTSSQASHTMLSEVEKISNLPRVAAKDRKSYPENASSAVEKVLVKPRTKKLKMQLASTNHIGLPDASDEKLCLKPLSTQDQDMESKDDVISACDRNTPAYNGNITIASSSRLGEVKISLNCDSALGQPNFSIPNLDIVMKFMDKKYIRSCNTVEPQFSMAKLLDDLCRIYLKLGYRKGSNSKRANLQQYVNQGERNPFRFISDITKGSEKVKISLIDETGSEDLPKFNYIPCNITYQSANVNISLARISDEGCCSDCSGNCLSSPLPCACAQETGGEFAYTPHGLLKEEFLTACVSMKNEPQDHHYVYCQECPLEKSKNEYMPERCKGHMVRKFIKECWRKCGCDMQCGNRIVQRGIACKLQVFSTREGKGWGLRTLEDLPKGTFVCEYVGEILTNMELYERIMQDTGNERHTYPVTLDADWGSEQGLKDEEALCLDATKNGNVGRFINHRCYDANLIDIPVEIESPDHHYYHLAFFTNRTVSANEELTWDYGIDFDDHDHPIKAFRCCCGSVFCCDKKQKGKGKIENQINVTRGMSELKQLE 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02296 677 CDD SET_SETDB-like 359 627 - -
Gma03g02296 677 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 664 - -
Gma03g02296 677 Pfam Pre-SET motif 338 485 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma03g02296 677 ProSiteProfiles Pre-SET domain profile. 391 490 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma03g02296 677 Gene3D SET domain 338 652 IPR046341 -
Gma03g02296 677 Gene3D - 1 59 IPR043017 -
Gma03g02296 677 SUPERFAMILY SET domain 345 649 IPR046341 -
Gma03g02296 677 SMART preset_2 335 477 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma03g02296 677 ProSiteProfiles SET domain profile. 493 627 IPR001214 GO:0005515
Gma03g02296 677 SMART set_7 493 633 IPR001214 GO:0005515
Gma03g02296 677 MobiDBLite consensus disorder prediction 65 88 - -
Gma03g02296 677 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 675 IPR025776 -
Gma03g02296 677 Pfam SET domain 505 627 IPR001214 GO:0005515
Gma03g02296 677 MobiDBLite consensus disorder prediction 65 91 - -
Gma03g02296 677 Pfam Ubiquitin-binding WIYLD domain 6 56 IPR018848 GO:0018024
Gma03g02296 677 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02296 Gma-Chr3 48184397 48190811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02296 334 649 Su(var)3-9 homologs AT5G04940 28.571 7.80e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma03g02296 Pre-SET 5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02296 - - gmx:100802372 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02332 19 51949338 51953259 Gma03g02296 03 48184397 48190811 GST
Gma03g02296 03 48184397 48190811 Gma10g00376 10 3573689 3579532 PCT
Gma03g02296 03 48184397 48190811 Gma13g01073 13 24886508 24891815 PCT