Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02276 ATGGCTCCCGATGCTTCCGACGCACTTGCAGCGAGGCAGAAAGTTCAATTGTTTCTGAACGCTGCTCGAACTGGATCAATTGATCTCTTAAAGAAATTGGCGTTGCAGCTGGACGAGGGTAAGGATTTGGCGAAATCGGTGGAAGCAATAAAGGACGCCAACAAGAGAGGTGCACTGCATTTTGCCGCGCGCGAAGGCCAAACCGCTGTTTGCGACTACCTCTTAACCGATTTGAAGCTCTCTGTCGATTCTCAAGATGATGATGGGGAGACTGCACTCATTCATGCTACTCGTCAGGGACATACCGCCACTGCTAAATATCTAATTGACCACGGTGCCGATCCTACCGTGGCTAGCAATTTAGGGGCTACGGTATTACACCATTCTGCAGGGATAGGGGATACTGAACTGCTCAAGTACTTGCTGTCCAGGGGAGTTAATCCTGATCTAGAGAGTGACTCGGGAACACCTTTGGTTTGGGCTGCTGGCCATGCCCAACCAGCTTCTGTCAGTGTACTATTGGAACATGGTGCAAATCCAAATGCTGAAACTGATGATGGTATTACTCCACTCCTTTCAGCTGTGGCAGCCAGTTCTCTGGCATGCTTAGAGCTGTTAATTCAGGCAGGTGCTAAAGTAAATATAAGTGCTGGTGGAGCAACTCCTTTGCACATCGCAGCTGATAATGGAAGTCTTGAACTATTAAATTGCTTATTGAAAGCGGGAGCTGATCCTAATGTCTCTGATGAGGATGGTGTCAAGCCAATACAAGTTGGTGCTGCAAGGGGCTATCTAAAAGCTGTTGAGATATTGTTCCCCTTGACATCCAAAGTAGATACTATTCCTACTTGGACTGTTGATGGGATACTCGAGTATATGCAATCTGAAACTAGAAAGCAGCTGGGCAATATGCAGGATGAATCGATAAATGACAAAGAAACTAATCAGCCCAAGGAAGCTGATTTTCCAAAGCAAAATGTCCCCGAGGTGGCACCTGAAGCCAAAAAGAGAGCAGCAGAATCAAAGTCAAGAGGGGATGAGGCTTTTAAAAGAAATGACTATCATATGGCTATAGATTCTTATACCCAAGCAATTGATCTGAACCCCACTGATGCTACTTTGCTATCCAATAGAAGTCTTTGTTGGATTAAGTTGGGTCAAGCTGAGCATGCTTTAGCTGATGCAAAGGCTTGTAGAGCTTTAAGACCAGATTGGCCAAAAGCTTGTTATAGGGAAGGGGCAGCTCTGCGTTTGTTGCAGAAATTTGATGAAGCTGCAAATGCTTTTTATGAGGGAGTAAAGCTTGATCCTGAAAATAAGGAGCTTGTAAATGCGTTCAGGGAAGCTGTCGAGGCTGGGAGGAAATTTCATGGAACTACTGAAAATAAATCATAG 1395 0.453 MAPDASDALAARQKVQLFLNAARTGSIDLLKKLALQLDEGKDLAKSVEAIKDANKRGALHFAAREGQTAVCDYLLTDLKLSVDSQDDDGETALIHATRQGHTATAKYLIDHGADPTVASNLGATVLHHSAGIGDTELLKYLLSRGVNPDLESDSGTPLVWAAGHAQPASVSVLLEHGANPNAETDDGITPLLSAVAASSLACLELLIQAGAKVNISAGGATPLHIAADNGSLELLNCLLKAGADPNVSDEDGVKPIQVGAARGYLKAVEILFPLTSKVDTIPTWTVDGILEYMQSETRKQLGNMQDESINDKETNQPKEADFPKQNVPEVAPEAKKRAAESKSRGDEAFKRNDYHMAIDSYTQAIDLNPTDATLLSNRSLCWIKLGQAEHALADAKACRALRPDWPKACYREGAALRLLQKFDEAANAFYEGVKLDPENKELVNAFREAVEAGRKFHGTTENKS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02276 464 SUPERFAMILY Ankyrin repeat 18 272 IPR036770 -
Gma03g02276 464 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Gma03g02276 464 ProSiteProfiles Ankyrin repeat region circular profile. 186 215 - -
Gma03g02276 464 Gene3D Tetratricopeptide repeat domain 336 451 IPR011990 GO:0005515
Gma03g02276 464 Gene3D - 154 308 IPR036770 -
Gma03g02276 464 Gene3D - 4 153 IPR036770 -
Gma03g02276 464 Pfam Ankyrin repeats (3 copies) 122 182 IPR002110 GO:0005515
Gma03g02276 464 Pfam Ankyrin repeats (3 copies) 20 117 IPR002110 GO:0005515
Gma03g02276 464 Pfam Ankyrin repeats (3 copies) 186 249 IPR002110 GO:0005515
Gma03g02276 464 MobiDBLite consensus disorder prediction 330 346 - -
Gma03g02276 464 Pfam Tetratricopeptide repeat 407 439 IPR019734 GO:0005515
Gma03g02276 464 Pfam Tetratricopeptide repeat 345 371 IPR019734 GO:0005515
Gma03g02276 464 ProSiteProfiles TPR repeat profile. 406 439 IPR019734 GO:0005515
Gma03g02276 464 MobiDBLite consensus disorder prediction 301 346 - -
Gma03g02276 464 SUPERFAMILY TPR-like 337 449 IPR011990 GO:0005515
Gma03g02276 464 SMART tpr_5 338 371 IPR019734 GO:0005515
Gma03g02276 464 SMART tpr_5 372 405 IPR019734 GO:0005515
Gma03g02276 464 SMART tpr_5 406 439 IPR019734 GO:0005515
Gma03g02276 464 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Gma03g02276 464 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 461 - -
Gma03g02276 464 ProSiteProfiles Ankyrin repeat region circular profile. 88 114 - -
Gma03g02276 464 ProSiteProfiles Ankyrin repeat region circular profile. 121 153 - -
Gma03g02276 464 ProSiteProfiles TPR repeat profile. 338 371 IPR019734 GO:0005515
Gma03g02276 464 ProSiteProfiles Ankyrin repeat region circular profile. 218 250 - -
Gma03g02276 464 ProSiteProfiles Ankyrin repeat profile. 121 153 IPR002110 GO:0005515
Gma03g02276 464 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 461 - -
Gma03g02276 464 SMART ANK_2a 218 247 IPR002110 GO:0005515
Gma03g02276 464 SMART ANK_2a 153 182 IPR002110 GO:0005515
Gma03g02276 464 SMART ANK_2a 54 84 IPR002110 GO:0005515
Gma03g02276 464 SMART ANK_2a 121 150 IPR002110 GO:0005515
Gma03g02276 464 SMART ANK_2a 186 215 IPR002110 GO:0005515
Gma03g02276 464 SMART ANK_2a 88 117 IPR002110 GO:0005515
Gma03g02276 464 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Gma03g02276 464 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02276 Gma-Chr3 48021536 48031441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02276 126 301 Ion Channels AT2G25600 29.609 4.04e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02276 - - gmx:100798118 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02276 03 48021536 48031441 Gma03g02276 03 48021536 48031441 ECH