Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02260 atggagcagtatgaaatacttgagcaaattggaaaaggtgcttttggttctgctcttcttgtgaagcataagcatgagaagaaaaaATATGTGCTGAAGAAGATCCGCCTTGCCCGCCAAACAGAGCGCTCTCGTAGGTCTGCACACCTGGAGATGGAGCTCCTCTCCAAATTAAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTAAAGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAGTGGTGTTATGTTTCCTGAGGAGAAACTATGTAAATGGCTTGTTCAACTTCTTATGGCACTTGATTACTTGCATGTGAACCATATTCTTCATCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAAATCATGACATACGCCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTAACTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTTCTTGCTGATATACCTTATGGCTCTAAATCGGATATTTGGTCCTTGGGATGTTGTATATACGAAATGACCTCACTTAAGCCTGCATTCAAAGCATTTGATATACAAGCCCTGATTAACAAGATCAATAAGTCCATAGTGGCCCCATTGCCAACAAAATATTCTGGGTCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTTGGGCACCATCATCTTCAGCCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACATTGCCAGAATCCAACTACATGAAGAAAACTAGATTTTTGAAGTCTGAAGATGATCATGTTTCCCTCTCTGGGAATAAGTGGCATTCTTTTAGCTATGATCGGACTTTAAATCCTAGTGTATCAGGAGCAGAGCAAGATTCTCTATGCTCTACGCTAGAGATTGATTGTACTCCTGATAATTTAAATCAAAGATTTGCTGAACTTTCTGTTGGAGACAACCCCGATGTAAAGTCACTCCATAAGCCAGCTGTTTCCAGAACTTCTATTAATGCCAAGACTCCTAGATTAGCTGCATCAAAAGCTTCTGCCACCCCCAAGAAATCAATGGTATTCTCAAAGAATCATAAGACGCTTCCTGTTTCATACAATACGAAAGAACCTGTCCATACAACTCGCAGAGCATCATTGCCATTCCCAAGAAGTTGTGCCATACAGCAGCCTCCTCGCAGGCCCAGTATTGGTTTACTTGACCATGTAAATTCACCAAATATTTCAGTTAACTCTCCCCGTATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGATCAATTGTTTCCCATCAATAGATCTTCTCCAAACTCGGCACAGGGTTCCGCAGGCTCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTAGGCCAGGATGTACGGATGCTTGGCAGGGAATCAAGCGCAGCAGGTTCAAGAAAAATGATGAGGATAAAAGTGGCTCATCTGATCAAAATGCAACTACTGGAGCATCAAGCCACAACTCTTCAGACTTGCGCCGCCGACAGTTTGATACATCGTCATTCCGACAAAGGGCTGAGGCCTTAGAAGGCTTGCTTGAATTTAGTGCAAGATTACTACAGCAGGAAAGGTATGGAGAACTAGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCGAGGGAAACTGCCATTTGGTTGAGCAAGAGTTTAAAGGAGAACACTTTTTCAGCAGGGAACAATTCACCTAAACTGCTGTAA 1863 0.4026 MEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCKGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKNHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSIVAPLPTKYSGSFRGLVKSMLRKNPELRPSAAELLGHHHLQPYVLKVHLKINSPRRSTLPESNYMKKTRFLKSEDDHVSLSGNKWHSFSYDRTLNPSVSGAEQDSLCSTLEIDCTPDNLNQRFAELSVGDNPDVKSLHKPAVSRTSINAKTPRLAASKASATPKKSMVFSKNHKTLPVSYNTKEPVHTTRRASLPFPRSCAIQQPPRRPSIGLLDHVNSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQGSAGSPCGNDSTLIDKCTIKVCDTSYVRPGCTDAWQGIKRSRFKKNDEDKSGSSDQNATTGASSHNSSDLRRRQFDTSSFRQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSLKENTFSAGNNSPKLL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02260 620 Gene3D Transferase(Phosphotransferase) domain 1 86 309 - -
Gma03g02260 620 MobiDBLite consensus disorder prediction 527 542 - -
Gma03g02260 620 CDD STKc_Nek 3 258 - -
Gma03g02260 620 PANTHER SERINE/THREONINE-KINASE NEK4 1 601 - -
Gma03g02260 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gma03g02260 620 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02260 620 SUPERFAMILY Protein kinase-like (PK-like) 1 307 IPR011009 -
Gma03g02260 620 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02260 620 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gma03g02260 620 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02260 620 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gma03g02260 620 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 601 - -
Gma03g02260 620 MobiDBLite consensus disorder prediction 517 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02260 Gma-Chr3 47913490 47919133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02260 10 259 MAP Kinase Kinase Kinase AT1G53570 32.157 1.16e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma03g02260 Pkinase 2.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02260 K08857 - gmx:100796515 1236.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02260 03 47913490 47919133 Gma03g02260 03 47913490 47919133 ECH
Gma19g02295 19 51670068 51686570 Gma03g02260 03 47913490 47919133 GST
Gma03g02260 03 47913490 47919133 Gma10g01590 10 42973584 42979761 PCT
Gma10g01590 10 42973584 42979761 Gma03g02260 03 47913490 47919133 PCT