LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g02260	atggagcagtatgaaatacttgagcaaattggaaaaggtgcttttggttctgctcttcttgtgaagcataagcatgagaagaaaaaATATGTGCTGAAGAAGATCCGCCTTGCCCGCCAAACAGAGCGCTCTCGTAGGTCTGCACACCTGGAGATGGAGCTCCTCTCCAAATTAAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTAAAGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAGTGGTGTTATGTTTCCTGAGGAGAAACTATGTAAATGGCTTGTTCAACTTCTTATGGCACTTGATTACTTGCATGTGAACCATATTCTTCATCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAAATCATGACATACGCCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTAACTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTTCTTGCTGATATACCTTATGGCTCTAAATCGGATATTTGGTCCTTGGGATGTTGTATATACGAAATGACCTCACTTAAGCCTGCATTCAAAGCATTTGATATACAAGCCCTGATTAACAAGATCAATAAGTCCATAGTGGCCCCATTGCCAACAAAATATTCTGGGTCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTTGGGCACCATCATCTTCAGCCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACATTGCCAGAATCCAACTACATGAAGAAAACTAGATTTTTGAAGTCTGAAGATGATCATGTTTCCCTCTCTGGGAATAAGTGGCATTCTTTTAGCTATGATCGGACTTTAAATCCTAGTGTATCAGGAGCAGAGCAAGATTCTCTATGCTCTACGCTAGAGATTGATTGTACTCCTGATAATTTAAATCAAAGATTTGCTGAACTTTCTGTTGGAGACAACCCCGATGTAAAGTCACTCCATAAGCCAGCTGTTTCCAGAACTTCTATTAATGCCAAGACTCCTAGATTAGCTGCATCAAAAGCTTCTGCCACCCCCAAGAAATCAATGGTATTCTCAAAGAATCATAAGACGCTTCCTGTTTCATACAATACGAAAGAACCTGTCCATACAACTCGCAGAGCATCATTGCCATTCCCAAGAAGTTGTGCCATACAGCAGCCTCCTCGCAGGCCCAGTATTGGTTTACTTGACCATGTAAATTCACCAAATATTTCAGTTAACTCTCCCCGTATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGATCAATTGTTTCCCATCAATAGATCTTCTCCAAACTCGGCACAGGGTTCCGCAGGCTCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTAGGCCAGGATGTACGGATGCTTGGCAGGGAATCAAGCGCAGCAGGTTCAAGAAAAATGATGAGGATAAAAGTGGCTCATCTGATCAAAATGCAACTACTGGAGCATCAAGCCACAACTCTTCAGACTTGCGCCGCCGACAGTTTGATACATCGTCATTCCGACAAAGGGCTGAGGCCTTAGAAGGCTTGCTTGAATTTAGTGCAAGATTACTACAGCAGGAAAGGTATGGAGAACTAGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCGAGGGAAACTGCCATTTGGTTGAGCAAGAGTTTAAAGGAGAACACTTTTTCAGCAGGGAACAATTCACCTAAACTGCTGTAA	1863	0.4026	MEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCKGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKNHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSIVAPLPTKYSGSFRGLVKSMLRKNPELRPSAAELLGHHHLQPYVLKVHLKINSPRRSTLPESNYMKKTRFLKSEDDHVSLSGNKWHSFSYDRTLNPSVSGAEQDSLCSTLEIDCTPDNLNQRFAELSVGDNPDVKSLHKPAVSRTSINAKTPRLAASKASATPKKSMVFSKNHKTLPVSYNTKEPVHTTRRASLPFPRSCAIQQPPRRPSIGLLDHVNSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQGSAGSPCGNDSTLIDKCTIKVCDTSYVRPGCTDAWQGIKRSRFKKNDEDKSGSSDQNATTGASSHNSSDLRRRQFDTSSFRQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSLKENTFSAGNNSPKLL	620

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma03g02260	620	Gene3D	Transferase(Phosphotransferase) domain 1	86	309	-	-
Gma03g02260	620	MobiDBLite	consensus disorder prediction	527	542	-	-
Gma03g02260	620	CDD	STKc_Nek	3	258	-	-
Gma03g02260	620	PANTHER	SERINE/THREONINE-KINASE NEK4	1	601	-	-
Gma03g02260	620	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	125	137	IPR008271	GO:0004672\|GO:0006468
Gma03g02260	620	Pfam	Protein kinase domain	4	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma03g02260	620	SUPERFAMILY	Protein kinase-like (PK-like)	1	307	IPR011009	-
Gma03g02260	620	SMART	serkin_6	4	258	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma03g02260	620	Gene3D	Phosphorylase Kinase; domain 1	1	83	-	-
Gma03g02260	620	ProSiteProfiles	Protein kinase domain profile.	4	258	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g02260	Gma-Chr3	47913490	47919133	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma03g02260	10	259	MAP Kinase Kinase Kinase	AT1G53570	32.157	1.16e-35	139

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Gma03g02260		Pkinase	2.9e-62	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g02260	K08857		-	gmx:100796515	1236.86

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma03g02260	03	47913490	47919133	Gma03g02260	03	47913490	47919133	ECH
Gma19g02295	19	51670068	51686570	Gma03g02260	03	47913490	47919133	GST
Gma03g02260	03	47913490	47919133	Gma10g01590	10	42973584	42979761	PCT
Gma10g01590	10	42973584	42979761	Gma03g02260	03	47913490	47919133	PCT

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