Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02241 ATGGGGTGTGTGATTAGCAGGGAAGTGTCGAAGGGGATAATCTCTGAGGTGAAGGAGGAGAAGGGTTTGAGTGGTGAGAGTAAGAGGAAGGTTGGTGGAGTGTCAGGGAGCAAAGGTGAGGTAGTGGAGGTTCAGAATGGTGAGAAGGAGAAGGGTGGTGAGGGGGTGCAGCGGTCTTGTGGCGAAAGGAGAAGATCGAAGGCGAATCCGAGGCTGAGCAATCCCCCGAAGCATTTGAGGGGGGAGCAGGTTGCAGCTGGGTGGCCGCCGTGGCTCACTGCAGTGTGTGGGGAAGCACTCAGCGGCTGGATTCCGCGAAAGGCCGACACCTTTGAGAAAATTGATAAGattgggcaaggaacttatagtaatgtgtacaaagctaaagacatgatgacaggtaaaattgttgccctaaagaaggttcgatttgacaatttggaacctgagagtgtaaaattcatggcgagagagattcttattttgcgaagattggatcatcccaatgttgtaaagttgcaaggtttagttacatcaaggatgtcctgtagtttgtatttggtgtttgattacatggagcatgatttggctggactTGCTGCTAGCCCAGGAATCAGGTTCACAGAGCCTCAGgttaaatgttacatgcatcagctgttatcaggacttgagcactgtcataaccgtcatgtacttcaccgtgatattaaaggatcaaatcttcttattgacaatgaaggaacacttaagattgctgactttggactggcttctatttttgatccaaaccataagcatcccatgactagtcgtgtagtaaccctttggtatcgacctcctgagttgcttcttggtgccacagattatagtgtgggtgtagacctctggagtgccggatgtattttaggagagttattggctgggaagccaatcATGCCTGGTCGTACAGAGgtggaacaattgcacaagatatacaaactatgtggttcaccttcagatgagtattggaagaagtcaaagttgcctaatgctacctcgtttaaaccacgagatccatacaagagacacataagagagacatttaaagattttccaccttctgctctacccctcattgatacacttcttgcaattgatccggtagaacggaaaactgcctcagatgctctaagaagtgagttctttaccacagaaccttatgcttgtgatccttctagtctcccaaaatatcccccaagcaaggaaatggatgctaaaCGACGGGATGATGAAATGAGAAGAGTAAGAGCTGCAGGCAAAGCTCAGGCTGATGGTCCAAAGAAGCATCGAACACGTAATCGTGCTGCAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAAGTTGGTTTTCCTTTGGGATCTTCACATCACATTGATCCAGATACCGTTCCTACTGATGTCTCTTTTACTTCAACCTCCTATACTTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGTAATGCGGCTGACATTGGAGTGCCAAAGCGGAAGAAACACACTGCAGCTGATGCATTGGACTTATCTAAACCACAGAAAGATGCCCTCAAGGATAAGGTTAAAGGAAAGAAAAGTATAGCTTAG 1722 0.2503 MGCVISREVSKGIISEVKEEKGLSGESKRKVGGVSGSKGEVVEVQNGEKEKGGEGVQRSCGERRRSKANPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGTLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATSFKPRDPYKRHIRETFKDFPPSALPLIDTLLAIDPVERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRVRAAGKAQADGPKKHRTRNRAAKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQVGFPLGSSHHIDPDTVPTDVSFTSTSYTYSKEPFQAWSGPIGNAADIGVPKRKKHTAADALDLSKPQKDALKDKVKGKKSIA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02241 573 MobiDBLite consensus disorder prediction 403 503 - -
Gma03g02241 573 MobiDBLite consensus disorder prediction 413 442 - -
Gma03g02241 573 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02241 573 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02241 573 PANTHER CELL DIVISION PROTEIN KINASE 52 550 - -
Gma03g02241 573 MobiDBLite consensus disorder prediction 539 573 - -
Gma03g02241 573 Gene3D Transferase(Phosphotransferase) domain 1 194 434 - -
Gma03g02241 573 MobiDBLite consensus disorder prediction 43 69 - -
Gma03g02241 573 CDD STKc_CDK9_like 111 395 - -
Gma03g02241 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Gma03g02241 573 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02241 573 MobiDBLite consensus disorder prediction 524 573 - -
Gma03g02241 573 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Gma03g02241 573 MobiDBLite consensus disorder prediction 462 484 - -
Gma03g02241 573 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Gma03g02241 573 Gene3D Phosphorylase Kinase; domain 1 98 193 - -
Gma03g02241 573 PANTHER OS01G0367700 PROTEIN 52 550 - -
Gma03g02241 573 MobiDBLite consensus disorder prediction 17 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02241 Gma-Chr3 47693599 47698832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02241 103 454 Core Cell Cycle Gene Families AT5G10270 50.000 7.07e-124 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma03g02241 Pkinase 2.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02241 K08819 - gmx:100786837 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02280 19 51462730 51468317 Gma03g02241 03 47693599 47698832 ECH
Gma03g02241 03 47693599 47698832 Gma03g02241 03 47693599 47698832 ECH
Gma19g02280 19 51462730 51468317 Gma03g02241 03 47693599 47698832 GST
Gma03g02241 03 47693599 47698832 Gma10g01564 10 42690410 42696963 PCT
Gma10g01564 10 42690410 42696963 Gma03g02241 03 47693599 47698832 PCT